View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4533_high_36 (Length: 237)
Name: NF4533_high_36
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_high_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 20300870 - 20300674
Alignment:
| Q |
19 |
ttccacctttattaaatagtaggaaagctttattattaaatcgagcgaaaaacataatttgagctaagctctaatatattacctgagttttttgatgtcc |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||| | |||| ||||||||||||||||||||| |||| |
|
|
| T |
20300870 |
ttccacctttattaaatagtagaaaagctttatta---aatcaagtgaaaaacataatttgagctcatctctggtatattacctgagttttttgaagtcc |
20300774 |
T |
|
| Q |
119 |
ttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttgtttctccctctatctgtatatag |
218 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20300773 |
ttctccacatgatatatgcacaaaggacaattacgagagttcctactatcacttctattgtaatgatgattgttttgtttctccctctatctgtaaatag |
20300674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 20063532 - 20063654
Alignment:
| Q |
93 |
tatattacctgagttttttgatgtccttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgtt |
192 |
Q |
| |
|
|||||||| |||| | ||||| || |||||||| |||||||||||||| | | ||||| ||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
20063532 |
tatattacttgagctgtttgaagttcttctccacatgatatatgcacaaatggaaattatgagagttcctattatcaccgaagttgtaatgatgactgtt |
20063631 |
T |
|
| Q |
193 |
ttgtttctccctctatctgtata |
215 |
Q |
| |
|
|| |||| ||||||||||||||| |
|
|
| T |
20063632 |
ttatttccccctctatctgtata |
20063654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 20302864 - 20302743
Alignment:
| Q |
97 |
ttacctgagttttttgatgtccttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttgt |
196 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||| | ||| |||| ||||| |||| ||||||| || ||||||||||||||||| | |
|
|
| T |
20302864 |
ttacctgagttttttgaaatccttctccacatgatataaccacaaatgacgattaagagagtgcctagtatcactataatcgtaatgatgattgtttttt |
20302765 |
T |
|
| Q |
197 |
ttctccctctatctgtatatag |
218 |
Q |
| |
|
|| ||||| |||||||| |||| |
|
|
| T |
20302764 |
ttgtccctttatctgtaaatag |
20302743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 20230710 - 20230607
Alignment:
| Q |
109 |
tttgatgtccttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttgtttctccctctat |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| | ||||||| | |||||||||| |||| |||| |||||| |||||||||| | ||| |
|
|
| T |
20230710 |
tttgatgtccttctccacgtgatatatgcacaaatgacaataataagagttgcaattatcactgtaattgcgatgaagattgtcttgtttctccatttat |
20230611 |
T |
|
| Q |
209 |
ctgt |
212 |
Q |
| |
|
|||| |
|
|
| T |
20230610 |
ctgt |
20230607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 20090116 - 20090229
Alignment:
| Q |
102 |
tgagttttttgatgtccttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttgtttctc |
201 |
Q |
| |
|
|||||| ||||| ||| ||||||| |||||||||||||| | ||||| ||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
20090116 |
tgagttgtttgaagtctttctccacatgatatatgcacaaattacaatattgggagttcctattatcactataattgtaatgatgactgttttgtttctt |
20090215 |
T |
|
| Q |
202 |
cctctatctgtata |
215 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
20090216 |
cctctctctatata |
20090229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 20169104 - 20169212
Alignment:
| Q |
109 |
tttgatgtccttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttgtttctccctctat |
208 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| |||||| | || ||||| ||||| || | |||||||||| || |||||||||||||||| |
|
|
| T |
20169104 |
tttgatgtccttctccagaagatatatgcacagatgacaatcatgagggttccaattattgttgtacctataatgatgatcgtcttgtttctccctctat |
20169203 |
T |
|
| Q |
209 |
ctgtatata |
217 |
Q |
| |
|
||||||||| |
|
|
| T |
20169204 |
ctgtatata |
20169212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 20278593 - 20278493
Alignment:
| Q |
115 |
gtccttctccaaatgatatatgcacagaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttgtttctccctctatctgtat |
214 |
Q |
| |
|
||||||||||| | |||||||||||| | |||||||| |||||||| ||||| |||| || |||||||| ||| |||||||| |||| |||||||| |
|
|
| T |
20278593 |
gtccttctccacaagatatatgcacaaataacaattactagagttccaattatgactgtacttacaatgatgagtgtcttgtttcttcctcgatctgtat |
20278494 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
20278493 |
a |
20278493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University