View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_high_6 (Length: 469)
Name: NF4533_high_6
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 189 - 454
Target Start/End: Complemental strand, 25190342 - 25190075
Alignment:
| Q |
189 |
cttgaaagagaaatacacttactttcttctgaaatctaacttttagtggaagaatgaaaatgataatgttagattaaattattgaa--cacttgttatta |
286 |
Q |
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| T |
25190342 |
cttgaaagagaaatacacttactttcttctgaaatctaacttttagtggaagaatgaaaatgataatgttagattaaattattgaatacacttgttatta |
25190243 |
T |
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| Q |
287 |
agcactaattatttgataggactttgttttaaaatggaccatgatggatttagtcattcaattatactcaatgaaaggtccctcttctttaactgtaatt |
386 |
Q |
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| T |
25190242 |
agcactaattatttgataggactttgttttaaaatggaccatgatggatttagtcattcaattatattcaatgaaaggtctctcttctttaactataatt |
25190143 |
T |
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| Q |
387 |
agctatttaatcattatctcatttaaacaattaatagtgtttttgaaaccctaaacgtccgtgatgat |
454 |
Q |
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| T |
25190142 |
aactatttaatcgttatctcatttaaacaattaatagtgtgtttgaaaccctaaacgtccatgatgat |
25190075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 25190487 - 25190360
Alignment:
| Q |
20 |
ctttgaaactggcttttcctcatcttagtcttaacttttaagattcatttaggtgcagtaaggtatagcacttctcagtttgttccttagagtttgtgga |
119 |
Q |
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| T |
25190487 |
ctttgaaactggctcttcctcatcttagtcttaacttttaagaatcatttaggtgcagtaaggtatagcacttctcagtttgttccttagagtttgtgga |
25190388 |
T |
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| Q |
120 |
gcatattcgaattaaacttcagttgtca |
147 |
Q |
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| T |
25190387 |
gcatattcgaatgaaacttcagttgtca |
25190360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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