View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_12 (Length: 447)

Name: NF4533_low_12
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_12
NF4533_low_12
[»] chr1 (15 HSPs)
chr1 (88-339)||(23182117-23182368)
chr1 (151-281)||(4977555-4977685)
chr1 (151-281)||(5316053-5316183)
chr1 (151-281)||(21741545-21741675)
chr1 (151-281)||(50880843-50880972)
chr1 (218-281)||(50881019-50881082)
chr1 (280-335)||(4977317-4977370)
chr1 (218-259)||(4977399-4977440)
chr1 (218-259)||(5316230-5316271)
chr1 (55-87)||(23181930-23181962)
chr1 (280-334)||(5316300-5316352)
chr1 (403-434)||(21741266-21741297)
chr1 (403-434)||(23182432-23182463)
chr1 (297-335)||(50881224-50881262)
chr1 (280-335)||(21741365-21741418)
[»] chr8 (5 HSPs)
chr8 (134-339)||(45472543-45472753)
chr8 (151-278)||(41878463-41878590)
chr8 (280-335)||(41878720-41878773)
chr8 (55-87)||(45472430-45472462)
chr8 (403-434)||(45472817-45472848)
[»] chr5 (11 HSPs)
chr5 (151-281)||(23285542-23285672)
chr5 (150-281)||(27078486-27078617)
chr5 (151-281)||(22987101-22987231)
chr5 (150-281)||(30853563-30853693)
chr5 (151-266)||(16592486-16592601)
chr5 (280-335)||(30853820-30853873)
chr5 (280-334)||(23285369-23285421)
chr5 (280-335)||(27078734-27078787)
chr5 (218-259)||(23285450-23285491)
chr5 (403-434)||(27078855-27078886)
chr5 (280-325)||(22986932-22986975)
[»] chr4 (22 HSPs)
chr4 (151-280)||(9579110-9579239)
chr4 (151-280)||(9584805-9584934)
chr4 (151-280)||(48208744-48208873)
chr4 (151-286)||(35780161-35780296)
chr4 (151-281)||(23510470-23510600)
chr4 (151-278)||(54779733-54779860)
chr4 (151-281)||(10978401-10978531)
chr4 (151-281)||(34769191-34769321)
chr4 (151-281)||(47128280-47128410)
chr4 (160-252)||(10431126-10431218)
chr4 (280-335)||(10431065-10431118)
chr4 (280-335)||(47128527-47128580)
chr4 (280-335)||(54779970-54780023)
chr4 (280-335)||(23510291-23510344)
chr4 (218-259)||(47128457-47128498)
chr4 (280-335)||(35779987-35780039)
chr4 (403-434)||(23510192-23510223)
chr4 (403-434)||(34768912-34768943)
chr4 (403-434)||(35779887-35779918)
chr4 (403-434)||(54780091-54780122)
chr4 (297-339)||(34769007-34769049)
chr4 (403-432)||(10430968-10430997)
[»] chr2 (10 HSPs)
chr2 (161-281)||(29940216-29940336)
chr2 (160-281)||(34715855-34715976)
chr2 (160-281)||(34693443-34693564)
chr2 (280-334)||(34693691-34693743)
chr2 (280-334)||(34716103-34716155)
chr2 (297-335)||(40445468-40445506)
chr2 (218-259)||(29940128-29940169)
chr2 (218-259)||(40445383-40445424)
chr2 (403-434)||(34693812-34693843)
chr2 (403-434)||(34716224-34716255)
[»] chr6 (3 HSPs)
chr6 (151-281)||(19740859-19740989)
chr6 (280-335)||(19740680-19740733)
chr6 (403-434)||(19740581-19740612)
[»] chr3 (4 HSPs)
chr3 (151-277)||(3954512-3954638)
chr3 (186-281)||(8073704-8073799)
chr3 (297-335)||(3954328-3954366)
chr3 (218-259)||(8073616-8073657)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 23182117 - 23182368
Alignment:
Q  88 tcattcatcagaaactcgcttgcagttgcagacagcagactctcattctcaacaagcaaagtatttcaattggttttcccctttccaacacaacactatt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23182117 tcattcatcagaaactcgcttgcagttgcagacagcagactctcattctcaacaagcaaagtatttcaattggttttcccctttccaacacaacactatt 23182216  T
Q  188 tggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactgatttat 287  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23182217 tggtaagtaaagaaactctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactgatttct 23182316  T
Q  288 gcatatttatactgttttgggagtttttgttaaaattattcaaatttctgtg 339  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23182317 gcatatttataccgttttgggagtttttgttaaaattattcaaatttctgtg 23182368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 4977685 - 4977555
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  4977685 tttcaattggttttcccctttccaaaacaacattgtttggtaagtaaagaaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 4977586  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||||||||||||||| ||||||||||    
T  4977585 agagatttgttgaatgttgaaaacaacactg 4977555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 5316053 - 5316183
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  5316053 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 5316152  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    | | |||||||||||||||| ||||||||||    
T  5316153 ataaatttgttgaatgttgaaaacaacactg 5316183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 21741675 - 21741545
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||| ||||||||    
T  21741675 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaataaagattgat 21741576  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    | | |||||||||||||||| ||||||||||    
T  21741575 aaaaatttgttgaatgttgaaaacaacactg 21741545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 50880843 - 50880972
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  ||||| |||||||||| |||| ||| ||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||||||||||    
T  50880843 tttcaataagtttttccctttccaaaacaa-actgtttggtaagtaaataaactgtctttcattaatttgaatgttgaaattgctaaaatagagattgat 50880941  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    || ||||||||||||||||| ||||||||||    
T  50880942 agtgatttgttgaatgttgaaaacaacactg 50880972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 50881019 - 50881082
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactg 281  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  50881019 ttgaatgttgaaattgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactg 50881082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 4977370 - 4977317
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  4977370 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 4977317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 4977440 - 4977399
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  4977440 ttgaatgttgaaattgctaaaatagagattgatagagatttg 4977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 5316230 - 5316271
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  5316230 ttgaatgttgaaattgctaaaatagagattgatagagatttg 5316271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 23181930 - 23181962
Alignment:
Q  55 ttccatccattccatcaccaccgattcacaaat 87  Q
    |||||||||||||||||||||||||||||||||    
T  23181930 ttccatccattccatcaccaccgattcacaaat 23181962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 5316300 - 5316352
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 334  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||||| ||||||    
T  5316300 tgatttctgcatatttaca--gttttgggagtttttgttaaaattatttaaattt 5316352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Complemental strand, 21741297 - 21741266
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  21741297 ggttcaatctcaacattgtatgtctaatgatg 21741266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 23182432 - 23182463
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  23182432 ggttcaatctcaacattgtatgtctaatgatg 23182463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 50881224 - 50881262
Alignment:
Q  297 tactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  50881224 tactattttgagagtttttgttaaaattattcaaatttc 50881262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 21741418 - 21741365
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  |||| |||  |||||||||||||||||||||||||||    
T  21741418 tgatttctgcatattta--ctgtattgaaagtttttgttaaaattattcaaatttc 21741365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 134 - 339
Target Start/End: Original strand, 45472543 - 45472753
Alignment:
Q  134 tctcaacaagcaaagtatttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatcc 233  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||     
T  45472543 tctcaacaagcaaagtatttcaattggttttcccctttccaaaacaacactatttggtaagtaaagaaactctctttcattaatttgaatgttgaaatct 45472642  T
Q  234 ctaaaatagagattgatagagatttgttgaatg-------ttgagaacaacactgatttatgcatatttatactgttttgggagtttttgttaaaattat 326  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  45472643 ctaaaatagagattgatagagatttgttgaatgttgagatttgagaacaacactgatttctgcatatt--tactgttttgggagtttttgttaaaattat 45472740  T
Q  327 tcaaatttctgtg 339  Q
    |||||||||||||    
T  45472741 tcaaatttctgtg 45472753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 41878463 - 41878590
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||| | ||||||||||||| ||| ||||||| ||||||||||||||||||||   ||||||||||||||||    
T  41878463 tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagattgat 41878562  T
Q  251 agagatttgttgaatgttgagaacaaca 278  Q
    |||||||||||||||||||| |||||||    
T  41878563 agagatttgttgaatgttgaaaacaaca 41878590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 41878720 - 41878773
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  41878720 tgatttctgcatatttat--tgttttgggaatttttgttaaaattattcaaatttc 41878773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 45472430 - 45472462
Alignment:
Q  55 ttccatccattccatcaccaccgattcacaaat 87  Q
    |||||||||||||||||||||||||||||||||    
T  45472430 ttccatccattccatcaccaccgattcacaaat 45472462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 45472817 - 45472848
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  45472817 ggttcaatctcaacattgtatgtctaatgatg 45472848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 23285672 - 23285542
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  23285672 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 23285573  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||||||||||||||| ||||||||||    
T  23285572 agagatttgttgaatgttgaaaacaacactg 23285542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 27078486 - 27078617
Alignment:
Q  150 atttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattga 249  Q
    ||||||||  |||||||||||||||| |||||||  |||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||||||    
T  27078486 atttcaatcagttttcccctttccaaaacaacacagtttgataagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattga 27078585  T
Q  250 tagagatttgttgaatgttgagaacaacactg 281  Q
    ||||||||||||||||||||| ||||||||||    
T  27078586 tagagatttgttgaatgttgaaaacaacactg 27078617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 22987231 - 22987101
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||| ||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  22987231 tttcaatcagttttcccctttccaaaacaatactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 22987132  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||||| ||||||||| ||||||||||    
T  22987131 agagatttgtagaatgttgaaaacaacactg 22987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 30853563 - 30853693
Alignment:
Q  150 atttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattga 249  Q
    ||||||||  |||||||||||||||| |||| | | ||||||||||||| ||| ||||||||||||||||||||||||||||  || |||||||||||||    
T  30853563 atttcaatcagttttcccctttccaaaacaatagtgtttggtaagtaaataaactctctttaattaatttgaatgttgaaattgct-aaatagagattga 30853661  T
Q  250 tagagatttgttgaatgttgagaacaacactg 281  Q
    ||||||||||||||||||||| ||||||||||    
T  30853662 tagagatttgttgaatgttgaaaacaacactg 30853693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 16592601 - 16592486
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||| ||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  16592601 tttcaatcagttttccccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 16592502  T
Q  251 agagatttgttgaatg 266  Q
    ||||||||||||||||    
T  16592501 agagatttgttgaatg 16592486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 30853820 - 30853873
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  30853820 tgatttatgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 30853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 23285421 - 23285369
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 334  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23285421 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaattt 23285369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 27078734 - 27078787
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  27078734 tgatttctgcatattta--ctgttttgggagttttttttaaaattattcaaatttc 27078787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 23285491 - 23285450
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  23285491 ttgaatgttgaaattgctaaaatagagattgatagagatttg 23285450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 27078855 - 27078886
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  27078855 ggttcaatctcaacattgtatgtctaatgatg 27078886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 22986975 - 22986932
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaatta 325  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||    
T  22986975 tgatttctgcatattta--ctgttttgggagtttttgttaaaatta 22986932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 9579239 - 9579110
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  9579239 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattactaaaatagagattgat 9579140  T
Q  251 agagatttgttgaatgttgagaacaacact 280  Q
    |||||||||||||||||||| |||||||||    
T  9579139 agagatttgttgaatgttgaaaacaacact 9579110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 9584934 - 9584805
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  9584934 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattactaaaatagagattgat 9584835  T
Q  251 agagatttgttgaatgttgagaacaacact 280  Q
    |||||||||||||||||||| |||||||||    
T  9584834 agagatttgttgaatgttgaaaacaacact 9584805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 48208744 - 48208873
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  48208744 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 48208843  T
Q  251 agagatttgttgaatgttgagaacaacact 280  Q
    |||||||||||||||||||| |||||||||    
T  48208844 agagatttgttgaatgttgaaaacaacact 48208873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 35780296 - 35780161
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    ||||||| |||||| |||||||||| |||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||  |||||||||||||||||    
T  35780296 tttcaatcggtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattagtttgaatgttgaaattgctaaaatagagattgat 35780197  T
Q  251 agagatttgttgaatgttgagaacaacactgattta 286  Q
    |||||||||||||||||||| |||||||||| ||||    
T  35780196 agagatttgttgaatgttgaaaacaacactgtttta 35780161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 23510600 - 23510470
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  23510600 tttcaatcagttttcccctttccaaaacaacactgtttggttagtaaataaactctctttcattaatttgaatgttgaaatttctaaaatagagattgat 23510501  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||||||||||||||| ||||||||||    
T  23510500 agagatttgttgaatgttgaaaacaacactg 23510470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 54779733 - 54779860
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||  |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  54779733 tttcaatcagttttcccctttccataacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 54779832  T
Q  251 agagatttgttgaatgttgagaacaaca 278  Q
    |||||||||||||||||||| |||||||    
T  54779833 agagatttgttgaatgttgaaaacaaca 54779860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 10978401 - 10978531
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||| |||||||||||  ||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  10978401 tttcaatcagtttccccctttccaaagcaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 10978500  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||| ||||||||||| ||||||||||    
T  10978501 agagattttttgaatgttgaaaacaacactg 10978531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 34769321 - 34769191
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||| ||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  34769321 tttcaatcagtttacccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 34769222  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    ||| |||||||||||||||| |||| |||||    
T  34769221 agaaatttgttgaatgttgaaaacagcactg 34769191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 47128280 - 47128410
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||||||||||| |||||| | ||||||||||||| ||| ||||||| ||||||||||||||||||||    |||||||||||||||    
T  47128280 tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgtgaaaatagagattgat 47128379  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||||||||||||||| ||||||||||    
T  47128380 agagatttgttgaatgttgaaaacaacactg 47128410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 10431218 - 10431126
Alignment:
Q  160 gttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatag 252  Q
    ||||| |||||| ||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||| ||||||   ||||||||||||||||||    
T  10431218 gtttttcccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgatgaaattgttaaaatagagattgatag 10431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 10431118 - 10431065
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10431118 tgatttatgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 10431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 47128527 - 47128580
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  47128527 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 47128580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 54779970 - 54780023
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  54779970 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 54780023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 23510344 - 23510291
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  23510344 tgatttctgcatattta--ctgttttcggagtttttgttaaaattattcaaatttc 23510291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 47128457 - 47128498
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  47128457 ttgaatgttgaaattgctaaaatagagattgatagagatttg 47128498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 35780039 - 35779987
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||    
T  35780039 tgatttatgcatattta--ctgttttaggagtttt-gttaaaattattcaaatttc 35779987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Complemental strand, 23510223 - 23510192
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  23510223 ggttcaatctcaacattgtatgtctaatgatg 23510192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Complemental strand, 34768943 - 34768912
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  34768943 ggttcaatctcaacattgtatgtctaatgatg 34768912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Complemental strand, 35779918 - 35779887
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  35779918 ggttcaatctcaacattgtatgtctaatgatg 35779887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 54780091 - 54780122
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  54780091 ggttcaatctcaacattgtatgtctaatgatg 54780122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 34769049 - 34769007
Alignment:
Q  297 tactgttttgggagtttttgttaaaattattcaaatttctgtg 339  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||    
T  34769049 tactattttgggagtttttgctaaaattattcaaatttatgtg 34769007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Complemental strand, 10430997 - 10430968
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatga 432  Q
    ||||||||||||||||||||||||||||||    
T  10430997 ggttcaatctcaacattgtatgtctaatga 10430968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 29940336 - 29940216
Alignment:
Q  161 ttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgt 260  Q
    ||||||||||||||| |||||||| | ||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  29940336 ttttcccctttccaaaacaacactgtctggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgt 29940237  T
Q  261 tgaatgttgagaacaacactg 281  Q
    |||||||||| ||||||||||    
T  29940236 tgaatgttgaaaacaacactg 29940216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 34715855 - 34715976
Alignment:
Q  160 gttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||| |||||||||| |||||| | ||||||||||||| ||| | ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  34715855 gtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttg 34715954  T
Q  260 ttgaatgttgagaacaacactg 281  Q
    ||||||||||| ||||||||||    
T  34715955 ttgaatgttgaaaacaacactg 34715976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 34693443 - 34693564
Alignment:
Q  160 gttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||| |||||||||| |||||| | ||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||||||||||||||||||     
T  34693443 gtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatttgaatgttgaaattgctaaaatagagattgatagagattta 34693542  T
Q  260 ttgaatgttgagaacaacactg 281  Q
    ||||||||||| ||||||||||    
T  34693543 ttgaatgttgaaaacaacactg 34693564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34693691 - 34693743
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 334  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  34693691 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaattt 34693743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34716103 - 34716155
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 334  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  34716103 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaattt 34716155  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 40445468 - 40445506
Alignment:
Q  297 tactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40445468 tactgttttgggagtttttgttaaaattattcaaatttc 40445506  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 29940169 - 29940128
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  29940169 ttgaatgttgaaattgctaaaatagagattgatagagatttg 29940128  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 40445383 - 40445424
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  40445383 ttgaatgttgaaattgctaaaatagagattgatagagatttg 40445424  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 34693812 - 34693843
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  34693812 ggttcaatctcaacattgtatgtctaatgatg 34693843  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Original strand, 34716224 - 34716255
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  34716224 ggttcaatctcaacattgtatgtctaatgatg 34716255  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 19740989 - 19740859
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  ||||| |||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||   |||||||||||| |||    
T  19740989 tttcaatcagtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagatagat 19740890  T
Q  251 agagatttgttgaatgttgagaacaacactg 281  Q
    |||||||||||||||||||| ||||||||||    
T  19740889 agagatttgttgaatgttgaaaacaacactg 19740859  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 19740733 - 19740680
Alignment:
Q  280 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  19740733 tgatttctgcatattta--ctgttttgggagtttttgttaaaattaatcaaatttc 19740680  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 434
Target Start/End: Complemental strand, 19740612 - 19740581
Alignment:
Q  403 ggttcaatctcaacattgtatgtctaatgatg 434  Q
    ||||||||||||||||||||||||||||||||    
T  19740612 ggttcaatctcaacattgtatgtctaatgatg 19740581  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 3954638 - 3954512
Alignment:
Q  151 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 250  Q
    |||||||  |||||||| ||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||   ||||||||||||||||    
T  3954638 tttcaatcagttttcccatttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagattgat 3954539  T
Q  251 agagatttgttgaatgttgagaacaac 277  Q
    |||||||||||||||||||| ||||||    
T  3954538 agagatttgttgaatgttgaaaacaac 3954512  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 8073799 - 8073704
Alignment:
Q  186 tttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactg 281  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8073799 tttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 8073704  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 3954366 - 3954328
Alignment:
Q  297 tactgttttgggagtttttgttaaaattattcaaatttc 335  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3954366 tactgttttgggagtttttgttaaaattattcaaatttc 3954328  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 8073657 - 8073616
Alignment:
Q  218 ttgaatgttgaaatccctaaaatagagattgatagagatttg 259  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  8073657 ttgaatgttgaaattgctaaaatagagattgatagagatttg 8073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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