View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4533_low_14 (Length: 399)
Name: NF4533_low_14
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 10496838 - 10496466
Alignment:
| Q |
10 |
attatactaagtcttaagtgatgacacaagcaaggaaaattctgatttcaaaatattcaaactacaaagcagtggattttgaaaagtatgaagctgattc |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10496838 |
attatactaagtcttaagtaatgacacaagcaaggaaaagtctgatttcaaaatattcaaactacaaagcaatggattttgaaaagtatgaagctgattc |
10496739 |
T |
|
| Q |
110 |
ataagctgattccaaatttaggttattgaacaattctgttttcaattcgacaccaagatagtataagcgttctgggacttctgcagccgctatttggcca |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
10496738 |
------------caaattgaggttattgaacaattctgttttcaattcgacaccaagatagtataagcgttttgggacttctacagccgctatttggcca |
10496651 |
T |
|
| Q |
210 |
tattttgaactcttttgttctacaacattgatctatgcatcaagagcttgcatttttgctttgattctcatgatcatggttacactgtcataatgaactt |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10496650 |
tattttgaactcttttgttttacaacattgatctatccatcaagagcttgcatttttgctttgattctcatgatcatggttacactgtcataatgaactt |
10496551 |
T |
|
| Q |
310 |
cccggtcttaccctcgtattttttggccattcacttcagaagagaaagagaggcatatcattgcttaatgtttcaggtttgtttt |
394 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
10496550 |
cccggtcttacactcgtattttttggccattcacttcagaagagaaagagagacatatcattgctgaatgtttcaggtttgtttt |
10496466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 8663425 - 8663491
Alignment:
| Q |
325 |
gtattttttggccattcacttcagaagagaaagagaggcatatcattgcttaatgtttcaggtttgt |
391 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| || | |||| ||||||||||| |
|
|
| T |
8663425 |
gtattttttagccattcacttcagaagagaaagagagacatatcaatgttgaatgattcaggtttgt |
8663491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 8672775 - 8672701
Alignment:
| Q |
320 |
ccctcgtattttttggccattcacttcagaagagaaagagaggcatatcattgcttaatgtttcaggtttgtttt |
394 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||||| |||||| ||| | |||| ||| |||||||||| |
|
|
| T |
8672775 |
ccctcatattttttagccattcatttcagaagagaaagagagacatatcgttgttgaatgattctggtttgtttt |
8672701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 4619735 - 4619553
Alignment:
| Q |
122 |
caaatttaggttattgaacaattctgttttcaattcgacaccaagatagtataagcgttctgggacttctgcagccgctatttggccatattttgaactc |
221 |
Q |
| |
|
|||||| ||||| |||||| |||| ||| |||| |||||| ||| ||||||||| || ||| |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4619735 |
caaattgaggtttttgaaccattcagttgtcaaccggacacccagacagtataagctttttggtacttcttcagccgctatttgtccatattttgaactc |
4619636 |
T |
|
| Q |
222 |
ttttgttctacaacattgatctatgcatcaagagcttgcatttttgctttgattctcatgatcatggttacactgtcataatg |
304 |
Q |
| |
|
|||| |||| ||| |||| | | ||||| ||||| ||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
4619635 |
ttttcacttacagaattcatctgttcttcaagggcttggatttttgctttgaatctcatgatcatagttgcactgtcataatg |
4619553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 613808 - 613633
Alignment:
| Q |
129 |
aggttattgaacaattctgttttcaattcgacaccaagatagtataagcgttctgggacttctgcagccgctatttggccatattttgaactcttttgtt |
228 |
Q |
| |
|
||||| |||||| |||||||| |||| |||||||||||||||||||| || || |||||| |||| |||||||| |||||||| || |||||| | |
|
|
| T |
613808 |
aggtttttgaaccattctgttgtcaaccggacaccaagatagtataagcttttaggaacttcttcagctgctatttgtccatatttcaaattcttttctc |
613709 |
T |
|
| Q |
229 |
ctacaacattgatctatgcatcaagagcttgcatttttgctttgattctcatgatcatggttacactgtcataatg |
304 |
Q |
| |
|
||| || | | | | ||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
613708 |
ttactgagtttacttcttcttcaagagcttggagttttgctttgaatctcatgatcatggtagcactgtcataatg |
613633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University