View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_15 (Length: 394)

Name: NF4533_low_15
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_15
NF4533_low_15
[»] chr3 (17 HSPs)
chr3 (2-371)||(21513365-21513734)
chr3 (301-382)||(49634047-49634128)
chr3 (245-309)||(3845210-3845274)
chr3 (245-304)||(52925714-52925773)
chr3 (319-369)||(49891284-49891334)
chr3 (267-311)||(2410026-2410070)
chr3 (245-311)||(12674936-12675002)
chr3 (300-384)||(43965629-43965713)
chr3 (245-309)||(54596741-54596805)
chr3 (246-287)||(38332657-38332698)
chr3 (270-311)||(41115458-41115499)
chr3 (331-371)||(190852-190892)
chr3 (294-358)||(29064042-29064106)
chr3 (322-370)||(32523360-32523408)
chr3 (267-311)||(33548188-33548232)
chr3 (350-382)||(35253475-35253507)
chr3 (267-311)||(43987648-43987692)
[»] chr5 (22 HSPs)
chr5 (252-369)||(17862453-17862570)
chr5 (248-342)||(1102077-1102171)
chr5 (249-311)||(1105366-1105428)
chr5 (245-339)||(7328690-7328784)
chr5 (299-370)||(29923236-29923307)
chr5 (297-368)||(34195204-34195274)
chr5 (245-371)||(10859857-10859983)
chr5 (245-311)||(13224715-13224780)
chr5 (256-310)||(35439049-35439103)
chr5 (267-361)||(38592175-38592269)
chr5 (300-382)||(42439625-42439707)
chr5 (299-371)||(12432972-12433044)
chr5 (267-311)||(38045394-38045438)
chr5 (245-311)||(29922817-29922883)
chr5 (319-360)||(3970430-3970471)
chr5 (265-306)||(12208944-12208985)
chr5 (245-301)||(14670941-14670997)
chr5 (246-309)||(39097188-39097251)
chr5 (299-377)||(6413959-6414036)
chr5 (245-285)||(3043126-3043166)
chr5 (245-309)||(18637225-18637289)
chr5 (319-371)||(42194550-42194602)
[»] chr7 (16 HSPs)
chr7 (302-371)||(18349772-18349841)
chr7 (270-377)||(48917471-48917578)
chr7 (319-377)||(19098498-19098556)
chr7 (245-371)||(38123685-38123810)
chr7 (245-311)||(45369085-45369151)
chr7 (246-311)||(12306658-12306723)
chr7 (273-347)||(45821721-45821796)
chr7 (245-311)||(45004908-45004974)
chr7 (245-309)||(883377-883441)
chr7 (245-309)||(1242706-1242770)
chr7 (252-312)||(21436095-21436155)
chr7 (267-311)||(48290336-48290380)
chr7 (289-340)||(33504503-33504554)
chr7 (302-377)||(47306691-47306766)
chr7 (245-311)||(15050215-15050281)
chr7 (247-311)||(12306902-12306966)
[»] chr1 (13 HSPs)
chr1 (322-371)||(48832907-48832956)
chr1 (267-371)||(1233268-1233371)
chr1 (299-371)||(35592491-35592562)
chr1 (245-316)||(18325182-18325253)
chr1 (299-364)||(28024711-28024776)
chr1 (319-371)||(11049264-11049316)
chr1 (267-311)||(15452431-15452475)
chr1 (267-311)||(32088669-32088713)
chr1 (302-377)||(39289276-39289351)
chr1 (321-371)||(31785072-31785122)
chr1 (319-384)||(27500299-27500364)
chr1 (278-311)||(48635287-48635320)
chr1 (248-312)||(4458502-4458566)
[»] chr2 (18 HSPs)
chr2 (245-337)||(9943346-9943438)
chr2 (298-377)||(44810368-44810447)
chr2 (325-371)||(13246759-13246805)
chr2 (304-366)||(3654918-3654980)
chr2 (300-370)||(28028837-28028907)
chr2 (245-287)||(40582672-40582714)
chr2 (302-367)||(37561704-37561769)
chr2 (302-370)||(37402253-37402321)
chr2 (247-311)||(37561632-37561695)
chr2 (246-309)||(15928532-15928595)
chr2 (245-336)||(43717265-43717355)
chr2 (265-311)||(7630359-7630405)
chr2 (245-311)||(44670990-44671056)
chr2 (246-287)||(37420317-37420358)
chr2 (267-340)||(43501088-43501160)
chr2 (319-371)||(13238814-13238866)
chr2 (245-285)||(16013833-16013873)
chr2 (325-365)||(29823529-29823569)
[»] chr6 (12 HSPs)
chr6 (245-312)||(29240547-29240614)
chr6 (245-312)||(33136578-33136645)
chr6 (245-311)||(7262994-7263060)
chr6 (245-311)||(26550442-26550508)
chr6 (304-356)||(25195580-25195632)
chr6 (245-312)||(33141802-33141869)
chr6 (245-311)||(5724726-5724792)
chr6 (245-307)||(9604438-9604500)
chr6 (245-287)||(10400816-10400858)
chr6 (249-309)||(6653736-6653796)
chr6 (303-371)||(13687590-13687658)
chr6 (245-305)||(30926881-30926941)
[»] scaffold0024 (1 HSPs)
scaffold0024 (319-382)||(23601-23664)
[»] chr8 (13 HSPs)
chr8 (245-295)||(11038105-11038155)
chr8 (245-311)||(41614767-41614833)
chr8 (319-370)||(11791753-11791804)
chr8 (247-294)||(23979257-23979304)
chr8 (299-357)||(39648372-39648430)
chr8 (246-311)||(8252721-8252785)
chr8 (265-306)||(13929808-13929849)
chr8 (245-287)||(39648265-39648307)
chr8 (302-371)||(1836231-1836300)
chr8 (303-371)||(32837401-32837470)
chr8 (267-316)||(34469247-34469296)
chr8 (319-371)||(26100165-26100217)
chr8 (267-311)||(40881044-40881088)
[»] chr4 (25 HSPs)
chr4 (245-309)||(49138933-49138997)
chr4 (245-295)||(43075986-43076036)
chr4 (280-377)||(53782576-53782673)
chr4 (302-366)||(29904011-29904075)
chr4 (247-309)||(8330039-8330102)
chr4 (300-371)||(22683859-22683930)
chr4 (245-311)||(26617723-26617789)
chr4 (299-358)||(33560602-33560661)
chr4 (324-371)||(39218480-39218527)
chr4 (245-307)||(2171710-2171772)
chr4 (245-311)||(2206440-2206506)
chr4 (300-362)||(11271565-11271627)
chr4 (245-311)||(20712573-20712639)
chr4 (299-369)||(39672872-39672941)
chr4 (302-371)||(4014165-4014234)
chr4 (246-311)||(41058850-41058915)
chr4 (245-286)||(47179568-47179609)
chr4 (245-329)||(53159095-53159180)
chr4 (249-312)||(471962-472026)
chr4 (272-316)||(2206792-2206836)
chr4 (247-311)||(25318743-25318806)
chr4 (267-311)||(25318992-25319036)
chr4 (319-371)||(43628132-43628184)
chr4 (319-359)||(46978294-46978334)
chr4 (245-305)||(55085104-55085164)
[»] scaffold0393 (1 HSPs)
scaffold0393 (272-311)||(12403-12442)
[»] scaffold0168 (1 HSPs)
scaffold0168 (245-309)||(31749-31813)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 371
Target Start/End: Complemental strand, 21513734 - 21513365
Alignment:
Q  2 tgtccgtcacgacaccaatacacatgattacattaaattttatgtcattttctcaaattagacatgtcctggtgtccgtgtctatgtatgtgtctgtgct 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21513734 tgtccgtcacgacaccaatacacatgattacattaaattttatgtcattttctcaaattagacatgtcctggtgtctgtgtctatgtatgtgtctgtgct 21513635  T
Q  102 tcatagctcatagtacaccatgaacttcgatatttctgcaaaatgcaggaaaatgcggttgtgatatcgctttgaactgcagtcacaattgcagttccgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513634 tcatagctcatagtacaccatgaacttcgatatttctgcaaaatgcaggaaaatgcggttgtgatatcgctttgaactgcagtcacaattgcagttccgt 21513535  T
Q  202 gaacacaatttagaattatgtttggttttaattttttatggagaaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtag 301  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21513534 gagcacaatttagaattatgtttggtttcaattttttatggagaaaattgattctagaggtggagaattgattttaacatgcttggatgttctcaagtag 21513435  T
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513434 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 21513365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 49634128 - 49634047
Alignment:
Q  301 gaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctca 382  Q
    ||||||||| ||||||  ||||||||||||||||||||| ||| ||| |||||| |||||||||| ||||| ||||| ||||    
T  49634128 gaattgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgattattacactcaagtttattattcaactca 49634047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 3845274 - 3845210
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||||||||| | |||||||||| |||||||||  || ||||||||||||||||||    
T  3845274 aaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgatt 3845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 52925773 - 52925714
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaat 304  Q
    ||||||||||||||||||| |||||||||||| |||||||||| || ||||| |||||||    
T  52925773 aaaattgattctagaggtgtataattgattttgacatgtttggttgctctcacgtagaat 52925714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 49891284 - 49891334
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaattt 369  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  49891284 agctaggatttgtagcatttgactctaaatgtgatttttacactcaaattt 49891334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 2410070 - 2410026
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  2410070 aatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 12674936 - 12675002
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||||| |||||| | |||||||  |||||||||||| |||| ||||||||| ||||||||    
T  12674936 aaaattgattctggaggtgtagaattgatcctaacatgtttggttgttttcaagtagagttgatttt 12675002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 43965629 - 43965713
Alignment:
Q  300 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcatt 384  Q
    |||||||||||||||||  ||||||||||| ||| ||||| || | ||||| | ||||||||||||| ||||  |||| ||||||    
T  43965629 agaattgattttaacttgaagctaggatttatagtttttgccttcgaacgtaaattttacactcaaaattattgttcaactcatt 43965713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 54596741 - 54596805
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    |||||| ||| |||||||| | |||||||| | |||||||||| |||| ||||||||||||||||    
T  54596741 aaaattaattttagaggtgtaaaattgattatgacatgtttggttgttttcaagtagaattgatt 54596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 38332698 - 38332657
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttgg 287  Q
    |||||||||||||| ||| |||||||||||| ||||||||||    
T  38332698 aaattgattctagatgtgtataattgattttgacatgtttgg 38332657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 41115499 - 41115458
Alignment:
Q  270 tgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||| ||||||||||||||| | ||||||||||||||||    
T  41115499 tgattttgacatgtttggatgttttaaagtagaattgatttt 41115458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 190852 - 190892
Alignment:
Q  331 tagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||||||| |||||||| |||||||| |||||||||||||    
T  190852 tagcttttgcctccaaacatgatttttgcactcaaatttat 190892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 29064042 - 29064106
Alignment:
Q  294 tcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgattttta 358  Q
    |||||||||||||||| ||||||| |  || ||||| || ||||||||| ||||| |||||||||    
T  29064042 tcaagtagaattgattctaacttaaaaatatgatttataacttttgacttcaaacatgattttta 29064106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 32523408 - 32523360
Alignment:
Q  322 taggatttgtagcttttgactccaaacgtgatttttacactcaaattta 370  Q
    ||||||||||||||||||| || |||  |||||||||||| ||||||||    
T  32523408 taggatttgtagcttttgattctaaaattgatttttacacacaaattta 32523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 33548188 - 33548232
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| ||||||||||||| | | ||||||||||||||||    
T  33548188 aattgattttgacatgtttggatgctattaagtagaattgatttt 33548232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 35253507 - 35253475
Alignment:
Q  350 tgatttttacactcaaatttatcattcatctca 382  Q
    |||||||||||||||||||||||||||| ||||    
T  35253507 tgatttttacactcaaatttatcattcaactca 35253475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 43987692 - 43987648
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| |||||||||||||||||  |||| ||||||||||    
T  43987692 aattgattttgacatgtttggatgttcttgagtacaattgatttt 43987648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 369
Target Start/End: Original strand, 17862453 - 17862570
Alignment:
Q  252 attctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtg 351  Q
    ||||||||||   |||||| |||||||||| |||| |||||||||||||||||||||||||||||  |||||  || |||||||||||| | ||||||||    
T  17862453 attctagaggcatataattaattttaacatatttgaatgttctcaagtagaattgattttaacttgaagctataatatgtagcttttgaattcaaacgtg 17862552  T
Q  352 atttttacactcaaattt 369  Q
    ||||| ||||||||||||    
T  17862553 attttcacactcaaattt 17862570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 1102077 - 1102171
Alignment:
Q  248 attgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgact 342  Q
    |||||||||||||| | |||||||||||| || ||||| | |||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  1102077 attgattctagaggggtataattgattttgacgtgtttaggtgttctgaagtagaattgattttaacttgaagctaggatttgtagcttttgact 1102171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 1105366 - 1105428
Alignment:
Q  249 ttgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  1105366 ttgattctagaggtgtataattgattttgacatttttggctgttctcaagtagaattgatttt 1105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 7328784 - 7328690
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttg 339  Q
    |||||||||| | |||||| |||||||||||| |||||| |||||||| |||| ||||||||||| ||||||  |||||| ||||| | ||||||    
T  7328784 aaaattgatttttgaggtgtataattgatttttacatgtctggatgttttcaaatagaattgattctaacttgaagctagaatttgaaacttttg 7328690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 29923236 - 29923307
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 370  Q
    ||||||||||| ||||||  ||||| ||||||| | |||| |||| ||||||||||||||||||||||||||    
T  29923236 tagaattgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaattta 29923307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 34195204 - 34195274
Alignment:
Q  297 agtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatt 368  Q
    |||| |||||||||||||||  |||||||||||||| ||||| ||||||||||||| ||| |||||||||||    
T  34195204 agtataattgattttaactttaagctaggatttgtatcttttaactccaaacgtga-tttaacactcaaatt 34195274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 371
Target Start/End: Complemental strand, 10859983 - 10859857
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactcc 344  Q
    |||||| ||| |||||||| | || ||||||| || |||||| ||||||||  |||||||||||| ||||||  |||||| ||||| |||||||| |||     
T  10859983 aaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaagctagaatttggagcttttgcctca 10859884  T
Q  345 aaacgtgatttttacactcaaatttat 371  Q
    | |  |||||||||  |||||||||||    
T  10859883 acatttgatttttaacctcaaatttat 10859857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 13224780 - 13224715
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||| | |||| ||||||||||    
T  13224780 aaaattgattctagagatgtataattgattttgacatgtttggatgttc-cgagtataattgatttt 13224715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 35439049 - 35439103
Alignment:
Q  256 tagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattt 310  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  35439049 tagaggtgaataattgattttaacatgtttggatgtcctcaagtggaatttattt 35439103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 38592175 - 38592269
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacac 361  Q
    ||||||| || | |||||||| || |||||||||||||||||| ||| ||  ||| || ||||||||||||||| || ||| |||||||||||||    
T  38592175 aattgatattgatatgtttggttgctctcaagtagaattgattctaatttgaagccagaatttgtagcttttgagtctaaatgtgatttttacac 38592269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 42439707 - 42439625
Alignment:
Q  300 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctca 382  Q
    |||||||||| ||||||  |||||| || |||||||||||| || |||||||||||||||||| || |||||| |||| ||||    
T  42439707 agaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaactca 42439625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 12433044 - 12432972
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||| |||| ||||||  |||||||||||||| || ||||||| ||||||||||| ||||| |||||||||    
T  12433044 tagaatggattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttat 12432972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 38045394 - 38045438
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  38045394 aattgattttgacatgtttgaatgttctcaagtagaattgatttt 38045438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 29922817 - 29922883
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||  ||| | |||||||||| |||||||||| ||||||| || ||||||||||||    
T  29922817 aaaattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgatttt 29922883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 3970471 - 3970430
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttaca 360  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  3970471 agctaggaattgtagcttttgactccaaacttgatttttaca 3970430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 12208985 - 12208944
Alignment:
Q  265 ataattgattttaacatgtttggatgttctcaagtagaattg 306  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  12208985 ataattgattttgacatgtttggatgttctcgagtagaattg 12208944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 14670941 - 14670997
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtag 301  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||  ||||||||||    
T  14670941 aaaattgattcaagaggtatagaattgattttaacatgtttggatactctcaagtag 14670997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 39097188 - 39097251
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||| |||||||| | |||||||||| |||||||||| || | ||| ||||||||||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgatt 39097251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 6413959 - 6414036
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 377  Q
    ||||||||||| ||||||  | ||| ||||| |||| |||||||||||| || ||||||||| |||||||||| |||||    
T  6413959 tagaattgattataacttcaaactatgattt-tagcatttgactccaaatgtaatttttacattcaaatttattattca 6414036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 3043166 - 3043126
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgttt 285  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  3043166 aaaattgattctagaggtgtagaattgattttgacatgttt 3043126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 18637225 - 18637289
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||| ||||| | ||||||||   |||||||||| || | ||||||||||||||||    
T  18637225 aaaattgattctaaaggtgaacaattgattcctacatgtttggttgctttcaagtagaattgatt 18637289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 42194602 - 42194550
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||||| |||||||||||||| || ||| ||| |||||||||| ||||||||    
T  42194602 agctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttat 42194550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 18349772 - 18349841
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||||||| ||  || |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  18349772 aattgattttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttat 18349841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 377
Target Start/End: Original strand, 48917471 - 48917578
Alignment:
Q  270 tgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattt 369  Q
    ||||||| || ||||||| || |||||||||||||||||| |||| || ||||||||||| | |||||||| || |||| |||||| || ||| ||||||    
T  48917471 tgattttgacgtgtttggctgctctcaagtagaattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaattt 48917570  T
Q  370 atcattca 377  Q
    ||| ||||    
T  48917571 atcgttca 48917578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 19098556 - 19098498
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 377  Q
    ||||| ||||||||| ||||| |||||||| | ||||||||||||||||||||||||||    
T  19098556 agctaagatttgtagtttttgcctccaaacataatttttacactcaaatttatcattca 19098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 371
Target Start/End: Complemental strand, 38123810 - 38123685
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactcc 344  Q
    |||||||||||||||| || | ||||||||||||||||||||| |  | | |||||||||||||| | ||||  |||||| | ||||||||| | | ||     
T  38123810 aaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgattct-acttgaagctagaaattgtagcttctaattct 38123712  T
Q  345 aaacgtgatttttacactcaaatttat 371  Q
    | |  ||||||||||||||||||||||    
T  38123711 agaattgatttttacactcaaatttat 38123685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 45369085 - 45369151
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||  ||||||| | | |||||||| | ||||||||||||||||||||||||||||||||    
T  45369085 aaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgatttt 45369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 12306658 - 12306723
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||| ||| ||||||||| | |||||||||| |||||||||| || ||||||||||||||||||||    
T  12306658 aaatggatcctagaggtgtagaattgattttgacatgtttggttgctctcaagtagaattgatttt 12306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 45821796 - 45821721
Alignment:
Q  273 ttttaacatgtttggatgttct-caagtagaattgattttaacttagagctaggatttgtagcttttgactccaaa 347  Q
    |||||||||||||||||||| | | ||||||||||||||||  ||  ||||| |||||||||||||||| ||||||    
T  45821796 ttttaacatgtttggatgtttttccagtagaattgattttaggttgaagctatgatttgtagcttttgattccaaa 45821721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 45004908 - 45004974
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||||| | |||||||||| |||||||||| |  |||| |||| ||||||||||    
T  45004908 aaaattgattctagaggtgtagaattgattttgacatgtttggttactctctagtataattgatttt 45004974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 883377 - 883441
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||||||||| | | |||||||| |||| |||| |||||||| | |||||||||||    
T  883377 aaaattgattctagaggtgtagagttgattttgacatatttgcatgttctccaatagaattgatt 883441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 1242706 - 1242770
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||||||||| | | |||||||| |||| |||| |||||||| | |||||||||||    
T  1242706 aaaattgattctagaggtgtagagttgattttgacatatttgcatgttctccaatagaattgatt 1242770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 21436155 - 21436095
Alignment:
Q  252 attctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 312  Q
    |||||||| ||| |||||||||||| ||||||||  |||||||| ||||||||| ||||||    
T  21436155 attctagaagtgtataattgattttgacatgttttaatgttctcgagtagaatttatttta 21436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 48290336 - 48290380
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||    
T  48290336 aattgattttgacatgtttggatgttttcaagcagaattgatttt 48290380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 33504554 - 33504503
Alignment:
Q  289 tgttctcaagtagaattgattttaacttagagctaggatttgtagcttttga 340  Q
    ||||||| ||||||| ||||| ||||||| |||||| |||||||||||||||    
T  33504554 tgttctcgagtagaagtgattataacttaaagctagaatttgtagcttttga 33504503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 47306766 - 47306691
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 377  Q
    |||| ||| ||||||| |||||||||||||||||||  ||||||||||| ||||  ||||||  |||||| |||||    
T  47306766 aattaattctaacttacagctaggatttgtagctttaaactccaaacgtaatttacacactcggatttatgattca 47306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 15050215 - 15050281
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||| ||| | |||||||||| || ||||||| |  ||||| ||||||||||||||    
T  15050215 aaaattgattctagaagtgaagaattgattttgacctgtttggttactctcatgtagaattgatttt 15050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 12306902 - 12306966
Alignment:
Q  247 aattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||| | |||||| | |||||||||| |||||||||| || |||  |||||||||||||||    
T  12306902 aattgattttggaggtgcaaaattgattttgacatgtttggttgctcttgagtagaattgatttt 12306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 48832907 - 48832956
Alignment:
Q  322 taggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48832907 taggatttgtagcttttgactccaaatgtgatttttacactcaaatttat 48832956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 1233268 - 1233371
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaa 366  Q
    ||||||||||   ||||||| |||||||  | ||||||||||| ||| ||| ||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  1233268 aattgattttggtatgtttgaatgttcttgattagaattgattataattta-agctaggatttgtagcttttggctctgaacatgatttttacactcaaa 1233366  T
Q  367 tttat 371  Q
    |||||    
T  1233367 tttat 1233371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 35592491 - 35592562
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||| |||| | ||||||||||| ||||||||    
T  35592491 tagaattgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttat 35592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 18325253 - 18325182
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaactt 316  Q
    |||| |||||| ||| ||| | |||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  18325253 aaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttaactt 18325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 28024711 - 28024776
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactca 364  Q
    |||||||| || ||||||| |||||  |||||||||||| |||||||||| || ||||||||||||    
T  28024711 tagaattggttctaacttaaagctataatttgtagctttcgactccaaacatggtttttacactca 28024776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 11049264 - 11049316
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||||||||||||||||| || |||  |||||||||||| |||||||||    
T  11049264 agctaggatttgtagcttttgattctaaaattgatttttacacacaaatttat 11049316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 15452431 - 15452475
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||    
T  15452431 aattgattttgacatctttggatgttctcgagtagaattgatttt 15452475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 32088713 - 32088669
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| |||||||||| || ||||||||||||||||||||    
T  32088713 aattgattttgacatgtttggttgctctcaagtagaattgatttt 32088669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 39289351 - 39289276
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 377  Q
    |||||||| ||||||  |||||| | || |||||||||| || |||||||||||||||||| ||| ||||| ||||    
T  39289351 aattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttca 39289276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 31785122 - 31785072
Alignment:
Q  321 ctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||||| |||||||| | |||||||| |||||| ||||||||||||||||    
T  31785122 ctaggatatgtagcttattactccaaaagtgattgttacactcaaatttat 31785072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 27500299 - 27500364
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcatt 384  Q
    ||||| ||||| ||||||||  |||||||| | ||||||||||||||||||||  |||| ||||||    
T  27500299 agctaagatttttagcttttccctccaaacattatttttacactcaaatttattgttcaactcatt 27500364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 48635320 - 48635287
Alignment:
Q  278 acatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||||||||||||||| ||||    
T  48635320 acatgtttggatgttctcaagtagaattggtttt 48635287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 4458502 - 4458566
Alignment:
Q  248 attgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 312  Q
    |||||||||||||||| |||||||| ||| |||||||||  ||  ||| |||| |||||||||||    
T  4458502 attgattctagaggtgtataattgactttgacatgtttgtttgcactccagtataattgatttta 4458566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 337
Target Start/End: Original strand, 9943346 - 9943438
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttt 337  Q
    ||||||||||||  ||||| | ||||||||||||||||||||| || |||||  ||||||||||| || |||  |||||||||||||||||||    
T  9943346 aaaattgattctgaaggtgtaaaattgattttaacatgtttggttgctctcacttagaattgattctagcttgaagctaggatttgtagcttt 9943438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 44810368 - 44810447
Alignment:
Q  298 gtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 377  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||  ||||| ||||||| ||| ||||||||||||||||    
T  44810368 gtagagttgattctaacttgaagctaggatttgtagcttttgacggcaaacatgattttaacattcaaatttatcattca 44810447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 13246759 - 13246805
Alignment:
Q  325 gatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  13246759 gatttgtaccttttgattccaaacgtgatttttacactcaaatttat 13246805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 3654980 - 3654918
Alignment:
Q  304 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaa 366  Q
    |||||| ||||||  |||||||||||||| ||||||||||||||| ||||| ||| |||||||    
T  3654980 ttgattctaacttcaagctaggatttgtaccttttgactccaaacatgattcttatactcaaa 3654918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 28028837 - 28028907
Alignment:
Q  300 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 370  Q
    |||||||| | ||||||  |||||| ||||||||||||||||| |||| ||||||||||| | ||||||||    
T  28028837 agaattgactataacttgaagctagaatttgtagcttttgactacaaatgtgatttttacgcacaaattta 28028907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 40582672 - 40582714
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttgg 287  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  40582672 aaaattgattctagaggtgtagaattgattttaacatgtttgg 40582714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 37561704 - 37561769
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaat 367  Q
    |||||||| ||||||  | ||| |||||||| ||||||||| |||| |||||||||||||||||||    
T  37561704 aattgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaat 37561769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 37402321 - 37402253
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 370  Q
    |||||| | ||||||  |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  37402321 aattgactctaacttgaagctagaatttgtagcttttgacttcaaacatgattgttacacttaaattta 37402253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 37561632 - 37561695
Alignment:
Q  247 aattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||| | |||||||||| ||||||||| || | |||||||||| ||||||||    
T  37561632 aattgattctagaggtgtaaaattgattttgacatgtttgaat-tcctcaagtagatttgatttt 37561695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 15928595 - 15928532
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||| |||||| | |||||||||| |||||||||| |||| |  |||||||||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 43717265 - 43717355
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagctt 336  Q
    ||||||||||||||| ||| | |||||||||| |||||||||||| ||    ||||||||||||| | ||||  |||||| |||||||||||    
T  43717265 aaaattgattctagatgtgtagaattgattttgacatgtttggatattgattagtagaattgattct-acttgaagctagaatttgtagctt 43717355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 7630359 - 7630405
Alignment:
Q  265 ataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||||| |||||||||| || | ||||||||||||||||||    
T  7630359 ataattgattttgacatgtttggttgctttcaagtagaattgatttt 7630405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 44671056 - 44670990
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||| | | ||||| ||||  ||||||||  |||||| ||||||||||||||||    
T  44671056 aaaattgattctagaggggtagaattgcttttggcatgtttgattgttctaaagtagaattgatttt 44670990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 37420358 - 37420317
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttgg 287  Q
    |||||||||||||||||| | |||||||||| ||||||||||    
T  37420358 aaattgattctagaggtgtagaattgattttgacatgtttgg 37420317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 43501088 - 43501160
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttga 340  Q
    |||||||| | |||||||||| || | |||||||||||||||| | ||||  | ||||||||||||||||||||    
T  43501088 aattgattctgacatgtttggttgctttcaagtagaattgattct-acttgaaactaggatttgtagcttttga 43501160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 13238814 - 13238866
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||||||||||||||   |||||||| ||  ||||||||||||||||||    
T  13238814 agctaggatttgtagctttaacctccaaacatggattttacactcaaatttat 13238866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 16013873 - 16013833
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgttt 285  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  16013873 aaaatttattctagaggtgtagaattgattttaacatgttt 16013833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 29823529 - 29823569
Alignment:
Q  325 gatttgtagcttttgactccaaacgtgatttttacactcaa 365  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  29823529 gatttgtagcttttgaccccaaatgtgatttctacactcaa 29823569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 29240614 - 29240547
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 312  Q
    ||||||||||||||||||| | |||||||||| ||||||| |||| || |||||||||||||||||||    
T  29240614 aaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgatttta 29240547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 33136645 - 33136578
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 312  Q
    |||||| |||||||||||| |||||||||||| |||||||||| || |||| |||| |||||||||||    
T  33136645 aaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatttta 33136578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 7262994 - 7263060
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||| ||| | |||||||||| |||| || |||||||||| |||| ||||||||||    
T  7262994 aaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt 7263060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 26550442 - 26550508
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||| ||||| |||||||| | |||||||||| |||||||||| ||| ||||| |||||||||||||    
T  26550442 aaaaatgattatagaggtgtagaattgattttgacatgtttggttgtactcaactagaattgatttt 26550508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 25195580 - 25195632
Alignment:
Q  304 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttt 356  Q
    |||||| ||||||  | ||||||| ||||||||||||||||||||||||||||    
T  25195580 ttgattctaacttgaaactaggatctgtagcttttgactccaaacgtgatttt 25195632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 33141869 - 33141802
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 312  Q
    ||||||||||||||  ||| | |||||||||| | |||||||| || ||||||||| |||||||||||    
T  33141869 aaaattgattctagcagtgtaaaattgattttgatatgtttggttgctctcaagtataattgatttta 33141802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 5724792 - 5724726
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||| |||||||| ||| | |||||||| | ||||||||||||| | ||| ||||||||||||||    
T  5724792 aaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgatttt 5724726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 9604438 - 9604500
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattga 307  Q
    ||||||||||||||| ||  | |||| ||||||||||||||||| |||  |||||||||||||    
T  9604438 aaaattgattctagacgtatagaatttattttaacatgtttggacgtttccaagtagaattga 9604500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 10400858 - 10400816
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttgg 287  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  10400858 aaaattgattctagaggtgtataattgattttgatatgtttgg 10400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 6653736 - 6653796
Alignment:
Q  249 ttgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    |||||||| | |||| |||||||||||| || ||||||| || | ||||||||||||||||    
T  6653736 ttgattctggcggtgtataattgattttgacttgtttggttgctgtcaagtagaattgatt 6653796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 13687590 - 13687658
Alignment:
Q  303 attgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||||| ||||||  || ||||| ||||||||| || |||||||  ||||||| ||||||||||||||    
T  13687590 attgattctaacttgaagataggacttgtagcttctgtctccaaatatgattttcacactcaaatttat 13687658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 30926941 - 30926881
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaatt 305  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||||  | |||| |||||||||    
T  30926941 aaaattgattctagaagtgtataattgcttttgacatgtttggtcgctctcgagtagaatt 30926881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 23664 - 23601
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctca 382  Q
    |||||||||||||||||||||| || | |||||||||||| ||| |||||||||||||| ||||    
T  23664 agctaggatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactca 23601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 11038105 - 11038155
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctc 295  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  11038105 aaaattgattctagaggtatataattgattttgacatgtttggatgttctc 11038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 41614767 - 41614833
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||||  | |||||||||| || |||||||||| | ||||||||||||||||||    
T  41614767 aaaattgattctagaggtataaaattgattttgacttgtttggatggtttcaagtagaattgatttt 41614833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 11791804 - 11791753
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 370  Q
    |||||||||||||||||||||| ||  ||||||||||||||||| |||||||    
T  11791804 agctaggatttgtagcttttgagtctcaacgtgatttttacactaaaattta 11791753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 23979257 - 23979304
Alignment:
Q  247 aattgattctagaggtggataattgattttaacatgtttggatgttct 294  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||    
T  23979257 aattgattctagaggtgtaaaattaattttaacatgtttggatgttct 23979304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 39648430 - 39648372
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgattttt 357  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||||||||| || |||||    
T  39648430 tagaactgattctaactttaagctaggatttgtagcttttgactccaaacttggttttt 39648372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 8252721 - 8252785
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||||||||||| | || ||||||| |||||||||| |||| | ||||||||||||||||    
T  8252721 aaattgattctagaggtgtagaactgattttgacatgtttggctgtt-ttaagtagaattgatttt 8252785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 13929849 - 13929808
Alignment:
Q  265 ataattgattttaacatgtttggatgttctcaagtagaattg 306  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  13929849 ataattgattttgacatgtttggatgttctcgagtagaattg 13929808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 39648307 - 39648265
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttgg 287  Q
    |||||||||||||||| || |||||||||||| ||||||||||    
T  39648307 aaaattgattctagagatgtataattgattttgacatgtttgg 39648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 1836300 - 1836231
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||| ||||||  ||||||||| ||||||||||||   |||| ||||| ||||||||||| |||||    
T  1836300 aattgattctaacttgaagctaggatgtgtagcttttgaaagcaaaagtgatatttacactcaagtttat 1836231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 32837401 - 32837470
Alignment:
Q  303 attgattttaacttagagctaggatttgtagcttttgactccaaacgtgattt-ttacactcaaatttat 371  Q
    |||||||||||| || |||||||||||||| | |||| |||||||| || ||| ||||| ||||||||||    
T  32837401 attgattttaacctaaagctaggatttgtatcctttgcctccaaacttgttttcttacattcaaatttat 32837470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 34469247 - 34469296
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgattttaactt 316  Q
    |||||||||| |||||||| |||||||||||||| |||| ||||| ||||    
T  34469247 aattgattttgacatgttttgatgttctcaagtataattaattttgactt 34469296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 26100217 - 26100165
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||||||||||||||||| || | |  |||||||||||| |||||||||    
T  26100217 agctaggatttgtagcttttgattctataattgatttttacacacaaatttat 26100165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 40881044 - 40881088
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| ||||||||| | ||||| ||||||||||||||||    
T  40881044 aattgattttgacatgtttgcaagttctaaagtagaattgatttt 40881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 49138997 - 49138933
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||||||||| | |||||||| | |||||||||| |||| ||||||| ||||||||    
T  49138997 aaaattgattctagaggtgtagaattgattctgacatgtttggttgttttcaagtaaaattgatt 49138933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 43075986 - 43076036
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctc 295  Q
    ||||||||||||||||||| | ||||||||||||||| |||| ||||||||    
T  43075986 aaaattgattctagaggtgcagaattgattttaacatatttgaatgttctc 43076036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 53782576 - 53782673
Alignment:
Q  280 atgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 377  Q
    |||||||||| || |  ||||||||||||| ||| ||  ||| ||||||||||| |||||| | ||||| | |||||||||||||||| |||| ||||    
T  53782576 atgtttggatttttttgagtagaattgattctaatttgaagccaggatttgtagattttgatttcaaacataatttttacactcaaatatatctttca 53782673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 29904011 - 29904075
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaa 366  Q
    |||||||| ||||||  |||||   |||||| |||||||||||||| ||||||||||||||||||    
T  29904011 aattgattctaacttgaagctatattttgtaacttttgactccaaaagtgatttttacactcaaa 29904075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 8330039 - 8330102
Alignment:
Q  247 aattgattctagaggtggataattga-ttttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||||||| |||||| | |||| |||||||||| || ||||||||| ||||||||    
T  8330039 aattgattctagaggtgaataattaattttttacatgtttggttgctctcaagtaaaattgatt 8330102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 22683859 - 22683930
Alignment:
Q  300 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||| ||| ||||||  ||||| ||| |||||||||||| || |||||||||||||||| | ||||||||    
T  22683859 agaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttat 22683930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 26617789 - 26617723
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatg-ttctcaagtagaattgatttt 311  Q
    ||||||||||||||| ||| | |||||||||| ||||||||||||| || |||| |||||||||||||    
T  26617789 aaaattgattctagatgtgtaaaattgattttgacatgtttggatgcttttcaa-tagaattgatttt 26617723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 33560661 - 33560602
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgattttta 358  Q
    ||||||||||| ||||  | |||||||||||||||||||||| || ||| ||||||||||    
T  33560661 tagaattgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgattttta 33560602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 39218527 - 39218480
Alignment:
Q  324 ggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||| ||| ||| ||||||||||||||||||||||||| |||||||    
T  39218527 ggatttatagttttagactccaaacgtgatttttacactcgaatttat 39218480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 2171710 - 2171772
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattga 307  Q
    |||||||||||||||| || | ||||  |||| |||||||||||||||||| |||| ||||||    
T  2171710 aaaattgattctagagttgtagaatttcttttgacatgtttggatgttctcgagtaaaattga 2171772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 2206506 - 2206440
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||||||||||||   || ||| ||||||||||||| |||||||  || ||||||||||||    
T  2206506 aaaattgattctagaggtgctgaaatgaatttaacatgtttgaatgttctagagcagaattgatttt 2206440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 11271627 - 11271565
Alignment:
Q  300 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacact 362  Q
    |||||||||| ||||||  |||||||||||||||||||||| || |||| ||| |||| ||||    
T  11271627 agaattgattctaacttgaagctaggatttgtagcttttgagtctaaacatgacttttgcact 11271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 20712573 - 20712639
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||||  | |||||||||| ||||| |||  || |||||| |||||||||||||    
T  20712573 aaaattgattctagaggtttagaattgatttttacatgcttgtttgctctcaaatagaattgatttt 20712639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 39672872 - 39672941
Alignment:
Q  299 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattt 369  Q
    ||||||||||| |||||| ||| |||| |||||||||||||||| | ||| |||||| |||||| ||||||    
T  39672872 tagaattgattataacttggagttagggtttgtagcttttgact-ctaacatgatttatacacttaaattt 39672941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 4014165 - 4014234
Alignment:
Q  302 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    |||||||| ||||||  ||||| |||||  | ||||||||||||||||| ||||||||| | ||||||||    
T  4014165 aattgattctaacttgaagctatgatttaaatcttttgactccaaacgtaatttttacagtaaaatttat 4014234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 41058850 - 41058915
Alignment:
Q  246 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||||| ||| | | |||||||| | ||||||||||||||| || |||| ||||||||||    
T  41058850 aaattgattctaaaggagtagaattgattgtgacatgtttggatgttttcgagtaaaattgatttt 41058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 47179609 - 47179568
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttg 286  Q
    |||||||||| ||||| || ||||||||||||||||||||||    
T  47179609 aaaattgattttagagatgtataattgattttaacatgtttg 47179568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 53159180 - 53159095
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagta-gaattgattttaacttagagctaggattt 329  Q
    ||||||||||||||||||| | || ||||||| | ||| |||| || ||||||||| ||||||||| ||| || ||||||| ||||    
T  53159180 aaaattgattctagaggtgtaaaactgattttgatatgcttggctgatctcaagtaggaattgattctaaattggagctagaattt 53159095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 472026 - 471962
Alignment:
Q  249 ttgattctagaggtggataattgatttta-acatgtttggatgttctcaagtagaattgatttta 312  Q
    ||||||||||| ||| | ||||||||||  ||||||||| ||||| || ||||||||||||||||    
T  472026 ttgattctagaagtgtagaattgatttttgacatgtttgaatgttgtcgagtagaattgatttta 471962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 2206836 - 2206792
Alignment:
Q  272 attttaacatgtttggatgttctcaagtagaattgattttaactt 316  Q
    ||||||||||| || ||||||||| ||||||||||||| ||||||    
T  2206836 attttaacatgctttgatgttctcgagtagaattgattctaactt 2206792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 25318743 - 25318806
Alignment:
Q  247 aattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||||||||||||||| |||||||| ||| |||||||  |||||| |  |||||||||||||||    
T  25318743 aattgattctagaggtgtataattga-tttgacatgttaagatgtttttgagtagaattgatttt 25318806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 25318992 - 25319036
Alignment:
Q  267 aattgattttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    |||||||||| |||||||||| || |||| |||||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgatttt 25319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 43628132 - 43628184
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 371  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||| | ||||||||    
T  43628132 agctaagatttgtagattttgactccaaacatgattttaacatttaaatttat 43628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 46978294 - 46978334
Alignment:
Q  319 agctaggatttgtagcttttgactccaaacgtgatttttac 359  Q
    |||||||||||||| ||||||| |||||| |||||||||||    
T  46978294 agctaggatttgtaccttttgaatccaaatgtgatttttac 46978334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 55085164 - 55085104
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaatt 305  Q
    ||||||||||||||||||  | |||||||||||||||||| || || | |||| |||||||    
T  55085164 aaaattgattctagaggtatagaattgattttaacatgttagggtgatgtcaactagaatt 55085104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 12442 - 12403
Alignment:
Q  272 attttaacatgtttggatgttctcaagtagaattgatttt 311  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12442 attttgacatgtttggatgttctcaagtagaattgatttt 12403  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 31749 - 31813
Alignment:
Q  245 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 309  Q
    ||||||||||||||||||| | |||||||| | |||||||||| |||| || |||| ||||||||    
T  31749 aaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgatt 31813  T

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