View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_16 (Length: 375)

Name: NF4533_low_16
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_16
NF4533_low_16
[»] chr1 (12 HSPs)
chr1 (142-277)||(40282611-40282749)
chr1 (161-277)||(9987436-9987554)
chr1 (161-277)||(21054192-21054310)
chr1 (161-277)||(9036652-9036770)
chr1 (142-277)||(20622034-20622171)
chr1 (142-274)||(51765634-51765766)
chr1 (180-277)||(44203868-44203968)
chr1 (164-270)||(8550607-8550713)
chr1 (164-270)||(13316175-13316281)
chr1 (164-270)||(49918589-49918695)
chr1 (164-211)||(833993-834040)
chr1 (164-211)||(13137804-13137851)
[»] chr2 (13 HSPs)
chr2 (141-277)||(6266926-6267062)
chr2 (160-274)||(32289803-32289917)
chr2 (164-274)||(4484151-4484261)
chr2 (180-277)||(12647218-12647318)
chr2 (180-277)||(13655861-13655961)
chr2 (164-274)||(4502956-4503066)
chr2 (164-274)||(30833583-30833693)
chr2 (142-270)||(5723056-5723185)
chr2 (164-211)||(723570-723617)
chr2 (164-211)||(34139596-34139643)
chr2 (164-211)||(36987898-36987945)
chr2 (164-211)||(42362643-42362690)
chr2 (164-209)||(11690787-11690832)
[»] chr7 (22 HSPs)
chr7 (142-273)||(24790240-24790371)
chr7 (19-141)||(2474146-2474268)
chr7 (161-277)||(20344131-20344250)
chr7 (164-270)||(43503975-43504080)
chr7 (180-277)||(6592172-6592272)
chr7 (180-277)||(6594390-6594490)
chr7 (180-277)||(18388592-18388692)
chr7 (180-277)||(18392028-18392128)
chr7 (180-277)||(32060154-32060254)
chr7 (164-268)||(48409048-48409152)
chr7 (164-270)||(4179012-4179118)
chr7 (180-277)||(1560497-1560597)
chr7 (142-274)||(39731606-39731739)
chr7 (164-268)||(25766780-25766884)
chr7 (164-270)||(23555280-23555386)
chr7 (164-211)||(4586459-4586506)
chr7 (164-270)||(43864483-43864589)
chr7 (164-211)||(47675960-47676007)
chr7 (164-209)||(1113952-1113997)
chr7 (164-209)||(14069657-14069702)
chr7 (164-209)||(14379685-14379730)
chr7 (164-209)||(41648837-41648882)
[»] chr3 (24 HSPs)
chr3 (142-277)||(7779802-7779937)
chr3 (180-277)||(54635359-54635458)
chr3 (161-277)||(45283222-45283340)
chr3 (161-277)||(6716735-6716854)
chr3 (142-274)||(23199938-23200069)
chr3 (164-277)||(801321-801435)
chr3 (180-277)||(3617686-3617786)
chr3 (180-277)||(25637666-25637766)
chr3 (164-270)||(5257967-5258073)
chr3 (180-277)||(10211631-10211731)
chr3 (142-274)||(23197745-23197870)
chr3 (179-270)||(5260161-5260252)
chr3 (180-277)||(4598355-4598455)
chr3 (180-277)||(4600576-4600676)
chr3 (180-277)||(10209411-10209511)
chr3 (164-270)||(9635947-9636053)
chr3 (164-211)||(761142-761189)
chr3 (160-211)||(7762564-7762615)
chr3 (164-211)||(22834830-22834877)
chr3 (164-211)||(29196213-29196260)
chr3 (164-211)||(39153188-39153235)
chr3 (164-211)||(40734795-40734842)
chr3 (164-211)||(40735680-40735727)
chr3 (164-208)||(29682657-29682701)
[»] chr8 (15 HSPs)
chr8 (161-277)||(25690190-25690308)
chr8 (180-277)||(3439738-3439835)
chr8 (158-277)||(2627970-2628090)
chr8 (164-270)||(19945182-19945288)
chr8 (164-274)||(31218492-31218602)
chr8 (180-277)||(42575157-42575257)
chr8 (164-270)||(34254154-34254260)
chr8 (164-270)||(30143579-30143685)
chr8 (164-270)||(34256330-34256436)
chr8 (142-270)||(42498434-42498562)
chr8 (164-211)||(3303494-3303541)
chr8 (164-211)||(4743051-4743098)
chr8 (164-211)||(5689565-5689612)
chr8 (164-211)||(15213084-15213131)
chr8 (164-211)||(41366441-41366488)
[»] chr5 (24 HSPs)
chr5 (160-277)||(9789041-9789157)
chr5 (160-277)||(18441461-18441577)
chr5 (161-277)||(29720598-29720718)
chr5 (142-274)||(16409714-16409846)
chr5 (161-277)||(29722758-29722878)
chr5 (161-277)||(29750973-29751093)
chr5 (180-277)||(10593494-10593594)
chr5 (161-277)||(22536108-22536224)
chr5 (160-270)||(26178125-26178235)
chr5 (180-277)||(25078357-25078457)
chr5 (180-277)||(25136326-25136426)
chr5 (142-270)||(36073843-36073972)
chr5 (180-277)||(40380327-40380427)
chr5 (180-277)||(40382538-40382638)
chr5 (160-270)||(26171005-26171115)
chr5 (164-274)||(30182823-30182933)
chr5 (180-277)||(16544647-16544747)
chr5 (179-270)||(13343299-13343390)
chr5 (164-270)||(30682746-30682852)
chr5 (180-277)||(16546869-16546969)
chr5 (164-211)||(28750479-28750526)
chr5 (165-267)||(39468373-39468475)
chr5 (164-211)||(42428254-42428301)
chr5 (167-212)||(16649661-16649706)
[»] chr6 (20 HSPs)
chr6 (161-277)||(27648088-27648205)
chr6 (180-277)||(16555106-16555203)
chr6 (180-277)||(16578352-16578449)
chr6 (180-277)||(16616931-16617028)
chr6 (180-277)||(16631662-16631759)
chr6 (180-277)||(16653349-16653446)
chr6 (142-277)||(6097248-6097383)
chr6 (164-270)||(2171350-2171456)
chr6 (164-277)||(3072580-3072693)
chr6 (142-230)||(412368-412456)
chr6 (180-277)||(25421542-25421642)
chr6 (180-277)||(33341935-33342035)
chr6 (180-258)||(6136135-6136216)
chr6 (180-277)||(6027482-6027582)
chr6 (164-270)||(5408893-5408999)
chr6 (164-270)||(5413218-5413324)
chr6 (164-270)||(16452151-16452257)
chr6 (164-266)||(30834357-30834459)
chr6 (180-277)||(34167316-34167416)
chr6 (167-270)||(9182857-9182960)
[»] scaffold0491 (2 HSPs)
scaffold0491 (142-274)||(10960-11092)
scaffold0491 (142-274)||(8534-8666)
[»] chr4 (15 HSPs)
chr4 (179-274)||(31495142-31495238)
chr4 (180-277)||(8395840-8395940)
chr4 (180-277)||(7122919-7123019)
chr4 (180-277)||(7125138-7125238)
chr4 (180-277)||(8393631-8393731)
chr4 (164-268)||(13992114-13992218)
chr4 (164-270)||(48143287-48143393)
chr4 (164-211)||(46147219-46147266)
chr4 (164-270)||(56178459-56178565)
chr4 (180-277)||(5136303-5136402)
chr4 (180-277)||(5138528-5138627)
chr4 (164-211)||(26175460-26175507)
chr4 (164-211)||(29999652-29999699)
chr4 (164-211)||(48893466-48893513)
chr4 (164-211)||(52467181-52467228)
[»] scaffold0565 (1 HSPs)
scaffold0565 (180-277)||(2436-2536)
[»] scaffold1808 (1 HSPs)
scaffold1808 (180-277)||(101-201)
[»] scaffold0674 (1 HSPs)
scaffold0674 (180-277)||(3558-3658)
[»] scaffold0286 (1 HSPs)
scaffold0286 (164-270)||(11804-11911)
[»] scaffold0137 (1 HSPs)
scaffold0137 (180-277)||(6511-6611)
[»] scaffold1519 (1 HSPs)
scaffold1519 (164-268)||(1157-1261)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 40282749 - 40282611
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccacc-aaccaaa--gtgtgtgcaagcaataat 238  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||    
T  40282749 tgttgtgaatcccggacgaaaccacaccaatgcaaactatgatgtgtggagcaaaggagagtggtaaccaccaaaacaaagtgtgtgtgcaagcaataat 40282650  T
Q  239 caacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  40282649 caacaaaacaccacctagatctaatctaggaaacaagtg 40282611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 9987554 - 9987436
Alignment:
Q  161 aaccacaccaatgc--aaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  9987554 aaccacaccaatacgaaaaatatgatgtgtggagcaaaggagagtggtaaccaccaatcaaagtgtgtgcaagcaataatcaacaaaacaccacctagat 9987455  T
Q  259 ctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||    
T  9987454 ctaatctaggaaacaagtg 9987436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 21054310 - 21054192
Alignment:
Q  161 aaccacaccaatgcaa--agtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||| |||  | ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  21054310 aaccacaccaatacaagaaatatgatgtgtggagcaaaggagagtggtaaccaccaaactaagtgtgtgcaagcaataatcaacaaaacaccacctagat 21054211  T
Q  259 ctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||    
T  21054210 ctaatctaggaaacaagtg 21054192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 9036770 - 9036652
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtg--tgtgcaagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||  ||||||||||| || ||||||||||||| ||||||    
T  9036770 aaccacaccaatgcaaaggatgatgtgtggagctaaggagagtggtaaccaccaaacaaagtgtttgtgcaagcaacaaacaacaaaacaccacctagat 9036671  T
Q  259 ctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||    
T  9036670 ctaatctaggaaacaagtg 9036652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 20622034 - 20622171
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt--gtgcaagcaataatc 239  Q
    |||||||||| ||  |||||||||||||  | | |||||||||||||||||||||||| ||| ||||||||||| ||||||||  |||||||||||||||    
T  20622034 tgttgtgaattcctaacgaaaccacacctgtaccaagtatgatgtgtggagcaaaggaaagtagtaaccaccaaacaaagtgtgtgtgcaagcaataatc 20622133  T
Q  240 aacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||| |||||||||||||||||||||||||    
T  20622134 aacaaaacaccacctagatctaatctaggaaacaagtg 20622171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 51765766 - 51765634
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||||||||||||| | || ||||||||||||||||||||| ||| |||||||| ||   ||||| |||||||||||||||||    
T  51765766 tgttgtgaattccgtacaaaaccacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccactaa-ttaagtgagtgcaagcaataatcaa 51765668  T
Q  242 caa-aacaccaactagatctaatctaggaaacaa 274  Q
    ||| |||| || ||||||||||||||||||||||    
T  51765667 caataacaacacctagatctaatctaggaaacaa 51765634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 44203968 - 44203868
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  44203968 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 44203869  T
Q  277 g 277  Q
    |    
T  44203868 g 44203868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 8550607 - 8550713
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  8550607 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacaacacctagatctaa 8550705  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  8550706 tctaggaa 8550713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 13316175 - 13316281
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||| ||||||||||||||||| ||| |||| ||  || |||||||  ||||||||||||||||||| |||| || ||||||||||    
T  13316175 cacaccaatacgaaatataatgtgtggagcaaaggaaagtagtaatcaataa-caaagtgaatgcaagcaataatcaacaataacagcacctagatctaa 13316273  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  13316274 tctaggaa 13316281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 49918695 - 49918589
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||| ||||||    
T  49918695 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacagcacctatatctaa 49918597  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  49918596 tctaggaa 49918589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 833993 - 834040
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  833993 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 834040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 13137804 - 13137851
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  13137804 cacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaacca 13137851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 141 - 277
Target Start/End: Complemental strand, 6267062 - 6266926
Alignment:
Q  141 atgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatca 240  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  6267062 atgttgtgaatcccggacgaaaccacaccaatgtaaactatgatgtgtggagcaaaggagagtggtaaccaccaaacaaagtgtgtgtaagcaaaaatca 6266963  T
Q  241 acaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||| || ||||||||||||||||||| |||||    
T  6266962 acaaaacaacacctagatctaatctaggaaagaagtg 6266926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 32289917 - 32289803
Alignment:
Q  160 aaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagat 258  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||| |||||||| || ||||||| |||||||||||||||||||| |||| || ||||||    
T  32289917 aaaccacaccaatacaaagtaagatgtgtggagcaaaggaaagtagtaaccactaa-caaagtgggtgcaagcaataatcaacaataacaacacctagat 32289819  T
Q  259 ctaatctaggaaacaa 274  Q
    ||||||||||||||||    
T  32289818 ctaatctaggaaacaa 32289803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 4484151 - 4484261
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||  || ||||||| |||||||||||||||||||| |||| || ||||||||||    
T  4484151 cacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgagtgcaagcaataatcaacaataacaacacctagatctaa 4484249  T
Q  263 tctaggaaacaa 274  Q
    ||||||||||||    
T  4484250 tctaggaaacaa 4484261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 12647218 - 12647318
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  12647218 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 12647317  T
Q  277 g 277  Q
    |    
T  12647318 g 12647318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 13655861 - 13655961
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | || ||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  13655861 atgatgtgtggagcgacggagagtggtaaccaccgaacagagtatattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 13655960  T
Q  277 g 277  Q
    |    
T  13655961 g 13655961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 4502956 - 4503066
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||| |||||||||| |||||| ||| |||||||  ||| ||||||  ||||||||||||||||||| |||| || ||||||||||    
T  4502956 cacaccaatacaaactataatgtgtggagtaaaggaaagtagtaaccaataac-aaagtgaatgcaagcaataatcaacaataacagcacctagatctaa 4503054  T
Q  263 tctaggaaacaa 274  Q
    ||||||||||||    
T  4503055 tctaggaaacaa 4503066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 30833693 - 30833583
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||  ||  |  ||| |||||||||||||||||||| |||| || ||||||||||    
T  30833693 cacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccattaattat-gtgagtgcaagcaataatcaacaataacaacacctagatctaa 30833595  T
Q  263 tctaggaaacaa 274  Q
    ||||||||||||    
T  30833594 tctaggaaacaa 30833583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 5723056 - 5723185
Alignment:
Q  142 tgttgtgaatcccgtacgaaac-cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatca 240  Q
    |||||||||| |||||| |||  ||||||||| |||| ||||||||||||||||||| | ||| |||||||   | ||||||| |  ||| |||||||||    
T  5723056 tgttgtgaattccgtacaaaaatcacaccaatacaaactatgatgtgtggagcaaagtaaagtagtaacca-atatcaaagtgagcacaaacaataatca 5723154  T
Q  241 acaa-aacaccaactagatctaatctaggaa 270  Q
    |||| |||| || ||||||||||||||||||    
T  5723155 acaataacaacacctagatctaatctaggaa 5723185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 723570 - 723617
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  723570 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 723617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 34139596 - 34139643
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  34139596 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 34139643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 36987898 - 36987945
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  36987898 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 36987945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 42362690 - 42362643
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  42362690 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 42362643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 11690832 - 11690787
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaac 209  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  11690832 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 11690787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 24790371 - 24790240
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||| |||||||||    
T  24790371 tgttgtgaattccgtacaaaaacacaccaatgcaaagtatgatgtgtggagcaacggaaagtggtaaccaccaaacaaagtgcgtgcaagtaataatcaa 24790272  T
Q  242 caaaacaccaactagatctaatctaggaaaca 273  Q
    |||||||||| |||||||||||||||||||||    
T  24790271 caaaacaccacctagatctaatctaggaaaca 24790240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 2474268 - 2474146
Alignment:
Q  19 gcataaatagtgtttgcgagacgcttacaaatgtgcattcaattgaaaaggagttggttcataatccgcatgagcgtgtgttttaaatgttgttttgagc 118  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||  ||||||||||||||||||| |||||||| |||||||||| |||||||| ||||    
T  2474268 gcataaataatgtttgcgagacgcttgcaaatgtgtattcaattggtaaggagttggttcataatctgcatgagcatgtgttttaagtgttgtttcgagc 2474169  T
Q  119 gtgaggaccttttcgatggataa 141  Q
    ||||||| |||||||||||||||    
T  2474168 gtgaggatcttttcgatggataa 2474146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 20344250 - 20344131
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaa---caccaactaga 257  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||   || || |||||    
T  20344250 aaccacaccaatgcaaagaatgatgtgtggagcaaaggagagtggtaaccaccaaacaaagtgtgtgcaagcaacaatcgacaaaaaaccagcacctaga 20344151  T
Q  258 tctaatctaggaaacaagtg 277  Q
    ||||||||||||||||||||    
T  20344150 tctaatctaggaaacaagtg 20344131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 43503975 - 43504080
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaa-agtgtgtgcaagcaataatcaacaaaacaccaactagatctaa 262  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||  | || ||||||||||    
T  43503975 cacaccaatacgaaatatgatgtgtggagcaaaggagagtggtaaccaccaacaaagtgtgtgtgcaagcaataatcaacaaa--aacagctagatctaa 43504072  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  43504073 tctaggaa 43504080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 6592172 - 6592272
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  6592172 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 6592271  T
Q  277 g 277  Q
    |    
T  6592272 g 6592272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 6594390 - 6594490
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  6594390 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 6594489  T
Q  277 g 277  Q
    |    
T  6594490 g 6594490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 18388592 - 18388692
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  18388592 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 18388691  T
Q  277 g 277  Q
    |    
T  18388692 g 18388692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 18392028 - 18392128
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| |  |||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  18392028 atgatgtgtggagcgacagagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 18392127  T
Q  277 g 277  Q
    |    
T  18392128 g 18392128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 32060154 - 32060254
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  32060154 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 32060253  T
Q  277 g 277  Q
    |    
T  32060254 g 32060254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 48409152 - 48409048
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||  || ||||||| |||||||||||||||||||| |||| || ||||||||||    
T  48409152 cacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgagtgcaagcaataatcaacaataacagcacctagatctaa 48409054  T
Q  263 tctagg 268  Q
    ||||||    
T  48409053 tctagg 48409048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 4179118 - 4179012
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||  || |||||||  || |||||||||||||||| |||| || ||||||||||    
T  4179118 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgaatgtaagcaataatcaacaataacagcacctagatctaa 4179020  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  4179019 tctaggaa 4179012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 1560497 - 1560597
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | || ||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  1560497 atgatgtgtggagcgacggagagtggtaaccaccgaacagagtatattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 1560596  T
Q  277 g 277  Q
    |    
T  1560597 g 1560597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 39731739 - 39731606
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatg-caaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatca 240  Q
    |||||||||| ||| || |||||||||||||  ||||||||||| |||  | ||||| | ||| |||||||  ||| |||||| ||||||||||||||||    
T  39731739 tgttgtgaattccggacaaaaccacaccaataacaaagtatgatatgtaaaacaaagaaaagtagtaaccaataac-aaagtgggtgcaagcaataatca 39731641  T
Q  241 acaa-aacaccaactagatctaatctaggaaacaa 274  Q
    |||| |||| || ||||||||||||||||||||||    
T  39731640 acaataacaacacctagatctaatctaggaaacaa 39731606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 25766780 - 25766884
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||| | ||| |||||||  || ||||||| | |||||||||||||||||| |||| || ||||||||||    
T  25766780 cacaccaatacgaaatatgatgtgtggagcaaagaaaagtagtaaccaataa-caaagtgagcgcaagcaataatcaacaataacagcacctagatctaa 25766878  T
Q  263 tctagg 268  Q
    ||||||    
T  25766879 tctagg 25766884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 23555386 - 23555280
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  23555386 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacaacacctagatctaa 23555288  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  23555287 tctaggaa 23555280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 4586506 - 4586459
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  4586506 cacaccaatgtaaactatgatgtgtggagcaaaggaaagtggtaacca 4586459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 43864589 - 43864483
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| |||||||||||||| |||||| |||||||| ||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  43864589 cacaccaatacaaactatgatgtgtggagtaaaggaaagtggtaatca-atatcaaagtgaacacaagcaataatcaacaataacagcacctagatctaa 43864491  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  43864490 tctaggaa 43864483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 47675960 - 47676007
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  47675960 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 47676007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 1113997 - 1113952
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaac 209  Q
    |||| |||| |||| ||||||||||||||||||||| |||||||||    
T  1113997 cacatcaatacaaactatgatgtgtggagcaaaggaaagtggtaac 1113952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 14069657 - 14069702
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaac 209  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  14069657 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 14069702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 14379685 - 14379730
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaac 209  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  14379685 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 14379730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 41648837 - 41648882
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaac 209  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  41648837 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaac 41648882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 7779802 - 7779937
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7779802 tgttgtgaattccgtacaaaaccacaccaatacgaagtaagatgtgtggagcaaaggagagtggtaaccaccaa-caaagtgtgtgcaagcaataatcaa 7779900  T
Q  242 c-aaaacaccaactagatctaatctaggaaacaagtg 277  Q
    | |||||| || |||||||||||||||||||||||||    
T  7779901 caaaaacagcacctagatctaatctaggaaacaagtg 7779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 54635458 - 54635359
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtg--caagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54635458 atgatgtgtggagcaaaggagagtggtaaccaccaaacaaagtgtgtgtgcaagcaataatcaacaaaacaccacctagatctaatctaggaaacaagtg 54635359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 45283340 - 45283222
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt--gtgcaagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||| ||||| |||||||||||||| | |||||| |||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||    
T  45283340 aaccacaccaatacaaagaatgatgtgtggagcgacggagagcggtaaccaccaaacaaagtgtttgtgcaagcaataatcaacaaaacaccacctagat 45283241  T
Q  259 ctaatctaggaaacaagtg 277  Q
    |||||||||||||| ||||    
T  45283240 ctaatctaggaaactagtg 45283222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 6716854 - 6716735
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtg--tgtgcaagcaataatcaa-caaaacaccaactaga 257  Q
    ||||||||||||||||||  ||||||||||||||| ||| || |||||||||||| |||||||  |||||||||||||||||| |||||||||| |||||    
T  6716854 aaccacaccaatgcaaagagtgatgtgtggagcaacggaaagcggtaaccaccaaacaaagtgtgtgtgcaagcaataatcaaccaaaacaccacctaga 6716755  T
Q  258 tctaatctaggaaacaagtg 277  Q
    ||||||||||||||||||||    
T  6716754 tctaatctaggaaacaagtg 6716735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 23199938 - 23200069
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||| ||| |||||||  || ||||||| |||||||||||||||||    
T  23199938 tgttgtgaattccgtacaaaaccacaccaatacaaagtatgatatgtggagcaaaggaaagtagtaaccaataa-caaagtgagtgcaagcaataatcaa 23200036  T
Q  242 caaaacaccaactagatctaatctaggaaacaa 274  Q
    ||| | | || ||||||||||||||||||||||    
T  23200037 caataaaacacctagatctaatctaggaaacaa 23200069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 801435 - 801321
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaac--aaaacaccaactagatcta 261  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||| ||  |||||||||||||||||||||||||  |||||| || |||||||||    
T  801435 cacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccactaat-aaagtgtgtgcaagcaataatcaacaaaaaacagcacctagatcta 801337  T
Q  262 atctaggaaacaagtg 277  Q
    ||||||||||||||||    
T  801336 atctaggaaacaagtg 801321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 3617786 - 3617686
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  3617786 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 3617687  T
Q  277 g 277  Q
    |    
T  3617686 g 3617686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 25637766 - 25637666
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | ||||||||   |||||||||  || ||||||||||||| ||||||||||||||||||||||||    
T  25637766 atgatgtgtggagcgacggagagtggtaaccacctaacaaagtgtattgtgcaagcaggaaacaacaaaacaccacctagatctaatctaggaaacaagt 25637667  T
Q  277 g 277  Q
    |    
T  25637666 g 25637666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 5257967 - 5258073
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||  || |||||||  ||||||||||||||||||| |||| || ||||||||||    
T  5257967 cacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgaatgcaagcaataatcaacaataacagcacctagatctaa 5258065  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  5258066 tctaggaa 5258073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 10211731 - 10211631
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||  | |   |||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  10211731 atgatgtgtggagcgacggagagtggtaaccaccaatcaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagt 10211632  T
Q  277 g 277  Q
    |    
T  10211631 g 10211631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 23197745 - 23197870
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||| ||| |||||||  ||  ||       |||||||||||||||    
T  23197745 tgttgtgaattccgtacaaaaccacaccaatacaaagtatgatatgtggagcaaaggaaagtagtaaccaataataaa-------gcaagcaataatcaa 23197837  T
Q  242 caaaacaccaactagatctaatctaggaaacaa 274  Q
    ||| | | ||  |||||||||||||||||||||    
T  23197838 caataaaacacatagatctaatctaggaaacaa 23197870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 5260161 - 5260252
Alignment:
Q  179 tatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaatctaggaa 270  Q
    ||||||||||||||||||||| ||| |||||||  || ||||||| |||||||||||||||||||| |||| || ||||||||||| ||||||    
T  5260161 tatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgagtgcaagcaataatcaacaataacaacacctagatctaatttaggaa 5260252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 4598355 - 4598455
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||  | |   |||||||| || ||| ||||||||| ||||||| ||||||||||||||||    
T  4598355 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgagcaagcaagaaacaataaaacaccacctagatccaatctaggaaacaagt 4598454  T
Q  277 g 277  Q
    |    
T  4598455 g 4598455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 4600576 - 4600676
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||  | |   |||||| | || ||||||||||||| ||||||| ||||||||||||||||    
T  4600576 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgagcaagccagaaacaacaaaacaccacctagatccaatctaggaaacaagt 4600675  T
Q  277 g 277  Q
    |    
T  4600676 g 4600676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 10209511 - 10209411
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||  | ||||||||||||||||||| |||||  | |   |||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  10209511 atgatgtgtggagtgacggagagtggtaaccaccaatcaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagt 10209412  T
Q  277 g 277  Q
    |    
T  10209411 g 10209411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 9635947 - 9636053
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  9635947 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacagcacctagatctaa 9636045  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  9636046 tctaggaa 9636053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 761189 - 761142
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  761189 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 761142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 7762615 - 7762564
Alignment:
Q  160 aaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    |||| |||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  7762615 aaactacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 7762564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 22834830 - 22834877
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  22834830 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 22834877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 29196213 - 29196260
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  29196213 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 29196260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 39153188 - 39153235
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  39153188 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 39153235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 40734842 - 40734795
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  40734842 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 40734795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 40735727 - 40735680
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  40735727 cacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaacca 40735680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 29682701 - 29682657
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaa 208  Q
    ||||||||| |||| ||||||||||||||||||||| ||| ||||    
T  29682701 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaa 29682657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 25690308 - 25690190
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtg--tgtgcaagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||||||||||||| ||||||    
T  25690308 aaccacaccaatacaaagaatgatgtgtggagcaaaggagagtggtaaccaccaaacaaagtgtgtgtgcaagcaagaatcaacaaaacaccacctagat 25690209  T
Q  259 ctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||    
T  25690208 ctaatctaggaaacaagtg 25690190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 3439835 - 3439738
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||| | |||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  3439835 atgatgtgtggagcgacggagagcggtaaccaccaaacaaagtgtgtgcaagcaacaatcaacaaaacaccacctagatctaatctaggaaacaagtg 3439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 2628090 - 2627970
Alignment:
Q  158 cgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagc-aataatcaacaa-aacaccaacta 255  Q
    ||||||||||||||| ||||||| |||||||||||||||||| ||| |||||||| || ||||||| |||||||| || ||||||||| |||| || |||    
T  2628090 cgaaaccacaccaatacaaagtaagatgtgtggagcaaaggaaagtagtaaccactaa-caaagtgggtgcaagcaaaaaatcaacaataacaacaccta 2627992  T
Q  256 gatctaatctaggaaacaagtg 277  Q
    ||||||||||||||||||||||    
T  2627991 gatctaatctaggaaacaagtg 2627970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 19945182 - 19945288
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| | ||||||||||||||||||| ||| |||||||  || |||||||  ||||||||||||||||||| |||| || ||||||||||    
T  19945182 cacaccaatacaaactttgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgaatgcaagcaataatcaacaataacagcacctagatctaa 19945280  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  19945281 tctaggaa 19945288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 31218602 - 31218492
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    |||||||||  ||| ||||||||||||||||||||| ||| | |||||  || |||||||  ||||||||||||||||||| |||| || ||||||||||    
T  31218602 cacaccaatataaactatgatgtgtggagcaaaggaaagtagcaaccaataa-caaagtgaatgcaagcaataatcaacaataacagcacctagatctaa 31218504  T
Q  263 tctaggaaacaa 274  Q
    ||||||||||||    
T  31218503 tctaggaaacaa 31218492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 42575157 - 42575257
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||  | |   |||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  42575157 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagt 42575256  T
Q  277 g 277  Q
    |    
T  42575257 g 42575257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 34254154 - 34254260
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | ||||||| |  ||||||||||||||||| |||| || ||||||||||    
T  34254154 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgagcacaagcaataatcaacaataacagcacctagatctaa 34254252  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  34254253 tctaggaa 34254260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 30143685 - 30143579
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  30143685 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacaacacctagatctaa 30143587  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  30143586 tctaggaa 30143579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 34256330 - 34256436
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   |  |||||| |  ||||||||||||||||| |||| || ||||||||||    
T  34256330 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atattaaagtgagcacaagcaataatcaacaataacagcacctagatctaa 34256428  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  34256429 tctaggaa 34256436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 42498562 - 42498434
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| ||| || ||| ||||||||| |||| ||||||||||||||||||||| ||| | |||||   | |||||||    ||||||||||| ||    
T  42498562 tgttgtgaattccggacaaaatcacaccaatacaaaatatgatgtgtggagcaaaggaaagtagcaacca-atatcaaagtgaacacaagcaataattaa 42498464  T
Q  242 caa-aacaccaactagatctaatctaggaa 270  Q
    ||| |||| || ||||||||||||||||||    
T  42498463 caataacaacacctagatctaatctaggaa 42498434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 3303494 - 3303541
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  3303494 cacaccaatacaaactatgatgtgtggagcaaaggaaagtggtaacca 3303541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 4743051 - 4743098
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||| ||||||||||||||||| |||||||||||    
T  4743051 cacaccaatacaaactataatgtgtggagcaaaggaaagtggtaacca 4743098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 5689612 - 5689565
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  5689612 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 5689565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 15213131 - 15213084
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  15213131 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 15213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 41366441 - 41366488
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  41366441 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 41366488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 9789041 - 9789157
Alignment:
Q  160 aaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatc 259  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||| || |||||||    
T  9789041 aaaccacaccaatacaaagtatgatgtgtggagcaaaggaaagtagtaaccaccaa-caaagtgtgtgcaagcaaaaatcaacaaaacagcacctagatc 9789139  T
Q  260 taatctaggaaacaagtg 277  Q
    |||||||||||| |||||    
T  9789140 taatctaggaaagaagtg 9789157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 18441461 - 18441577
Alignment:
Q  160 aaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatc 259  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||    
T  18441461 aaaccacaccaatacaaagtaagatgtgtggagcaaaggaaagtagtaaccaccaac-aaagtgtgtgcaagcaataatcaacaaaacagcacctagatc 18441559  T
Q  260 taatctaggaaacaagtg 277  Q
    |||||||||||| |||||    
T  18441560 taatctaggaaagaagtg 18441577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 29720718 - 29720598
Alignment:
Q  161 aaccacaccaatgcaa--agtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtg--caagcaataatcaacaaaacaccaactag 256  Q
    |||||||||||| |||  | |||| |||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||    
T  29720718 aaccacaccaatacaagaaatatgttgtgtggagcaaaggagagtggtaaccaccaaacaaagtgtgtgtacaagcaataatcaacaaaacaccacctag 29720619  T
Q  257 atctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||||    
T  29720618 atctaatctaggaaacaagtg 29720598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 16409846 - 16409714
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| || ||||||| |||||||||||||||||    
T  16409846 tgttgtgaattccgtacaaaatcacaccaatacaaagtatgatgtgtggagcaaaggaaagtagtaaccactaa-caaagtgggtgcaagcaataatcaa 16409748  T
Q  242 caa-aacaccaactagatctaatctaggaaacaa 274  Q
    ||| |||| || ||||||||||||||||||||||    
T  16409747 caataacaacacctagatctaatctaggaaacaa 16409714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 29722878 - 29722758
Alignment:
Q  161 aaccacaccaatgcaa--agtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtg--caagcaataatcaacaaaacaccaactag 256  Q
    |||||||||||| |||  | |||| |||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||    
T  29722878 aaccacaccaatacaagaaatatggtgtgtggagcaaagtagagtggtaaccaccaaacaaagtgtgtgtacaagcaataatcaacaaaacaccacctag 29722779  T
Q  257 atctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||||    
T  29722778 atctaatctaggaaacaagtg 29722758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 29750973 - 29751093
Alignment:
Q  161 aaccacaccaatgcaa--agtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt--gtgcaagcaataatcaacaaaacaccaactag 256  Q
    |||||||||||| |||  | ||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||||||||| ||||    
T  29750973 aaccacaccaatacaagaaatatgatgtgtggagcaaaggagagtggtaaccaccaaacaatgtgtgtgtgcaagcaataatcaacaaaacaccacctag 29751072  T
Q  257 atctaatctaggaaacaagtg 277  Q
    || |||||||| |||||||||    
T  29751073 atataatctagaaaacaagtg 29751093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 10593594 - 10593494
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  10593594 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtgtattgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagt 10593495  T
Q  277 g 277  Q
    |    
T  10593494 g 10593494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 22536108 - 22536224
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccacc-aaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatc 259  Q
    |||||||||||| ||||| |||||||||||||| | |||||| |||||||||| || |||||||| ||||||||| ||||||||||| | || |||||||    
T  22536108 aaccacaccaatacaaagaatgatgtgtggagcgacggagagcggtaaccaccaaagcaaagtgtatgcaagcaacaatcaacaaaa-aacacctagatc 22536206  T
Q  260 taatctaggaaacaagtg 277  Q
    ||||||||||||||||||    
T  22536207 taatctaggaaacaagtg 22536224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 26178235 - 26178125
Alignment:
Q  160 aaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa-caaaacaccaactagat 258  Q
    ||||||||||||| | ||||| |||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||  | |||| || ||||||    
T  26178235 aaaccacaccaatacgaagtaagatgtgtggagcaaaggaaagtagtaaccactaa-caaagtgtgtgcaagcaataatcaatgataacaacacctagat 26178137  T
Q  259 ctaatctaggaa 270  Q
    ||||||||||||    
T  26178136 ctaatctaggaa 26178125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 25078457 - 25078357
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  25078457 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 25078358  T
Q  277 g 277  Q
    |    
T  25078357 g 25078357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 25136426 - 25136326
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  25136426 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 25136327  T
Q  277 g 277  Q
    |    
T  25136326 g 25136326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 36073843 - 36073972
Alignment:
Q  142 tgttgtgaatcccgtacgaaa-ccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatca 240  Q
    |||||||||| |||||| ||| |||||||||| |||| ||||||||||||||||||||| |||  ||||||  || |||||||  |||||||||||||||    
T  36073843 tgttgtgaattccgtacaaaaaccacaccaatacaaactatgatgtgtggagcaaaggaaagtaataaccaataa-caaagtgaatgcaagcaataatca 36073941  T
Q  241 acaa-aacaccaactagatctaatctaggaa 270  Q
    |||| |||| || ||||||||||||||||||    
T  36073942 acaataacagcacctagatctaatctaggaa 36073972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 40380427 - 40380327
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  40380427 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 40380328  T
Q  277 g 277  Q
    |    
T  40380327 g 40380327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 40382638 - 40382538
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    ||||||||||||||   ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  40382638 atgatgtgtggagcggcggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 40382539  T
Q  277 g 277  Q
    |    
T  40382538 g 40382538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 26171115 - 26171005
Alignment:
Q  160 aaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatc-aacaaaacaccaactagat 258  Q
    ||||||||||||| | ||||| |||||||||||||||||| ||| |||| ||| || ||||||||||||||||||||||| |  | |||| || ||||||    
T  26171115 aaaccacaccaatacgaagtaagatgtgtggagcaaaggaaagtagtaagcactaa-caaagtgtgtgcaagcaataatcgatgataacaacacctagat 26171017  T
Q  259 ctaatctaggaa 270  Q
    ||||||||||||    
T  26171016 ctaatctaggaa 26171005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 30182933 - 30182823
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||  |||| ||||||||||||||||||||| ||| |||||||  || |||||||  ||||| ||||||||||||| |||| || ||||||||||    
T  30182933 cacaccaaaacaaactatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgaatgcaaacaataatcaacaataacaacacctagatctaa 30182835  T
Q  263 tctaggaaacaa 274  Q
    ||||||||||||    
T  30182834 tctaggaaacaa 30182823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 16544747 - 16544647
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||  | |   |||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  16544747 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgagcaagcaagaaacaacaaaacaccacctagatccaatctaggaaacaagt 16544648  T
Q  277 g 277  Q
    |    
T  16544647 g 16544647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 13343390 - 13343299
Alignment:
Q  179 tatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaatctaggaa 270  Q
    ||||||||||||||||||||| ||| |||||||  || |||||||  ||||||||||||||||||| |||| || ||||||||||||||||||    
T  13343390 tatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgaatgcaagcaataatcaacaataacaacacctagatctaatctaggaa 13343299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 30682746 - 30682852
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  30682746 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacaacacctagatctaa 30682844  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  30682845 tctaggaa 30682852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 16546969 - 16546869
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | |||||||| |||||||||| |||||  | |   |||||||| || ||||||||||||| ||| ||| ||||||||||||||||    
T  16546969 atgatgtgtggagcgacggagagtgataaccaccaaacaaagcttattgagcaagcaagaaacaacaaaacaccacctaaatccaatctaggaaacaagt 16546870  T
Q  277 g 277  Q
    |    
T  16546869 g 16546869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 28750479 - 28750526
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  28750479 cacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaacca 28750526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 39468373 - 39468475
Alignment:
Q  165 acaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaat 263  Q
    |||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||| ||||||||||||| |||| || |||||||||||    
T  39468373 acaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaaacaataatcaacaataacagcacctagatctaat 39468471  T
Q  264 ctag 267  Q
    ||||    
T  39468472 ctag 39468475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 42428254 - 42428301
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  42428254 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 42428301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 16649661 - 16649706
Alignment:
Q  167 accaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccac 212  Q
    |||||| |||| ||||||||||||||||||||| ||| ||||||||    
T  16649661 accaatacaaactatgatgtgtggagcaaaggaaagtagtaaccac 16649706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 27648205 - 27648088
Alignment:
Q  161 aaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtg--caagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||| ||||||    
T  27648205 aaccacaccaatacaa-gaatgatgtgtggagcaaaggagagtggtaaccaccgaacaaagtgtgtgtgcaagcaataatcaacaaaacaccacctagat 27648107  T
Q  259 ctaatctaggaaacaagtg 277  Q
    |||||||||||||||||||    
T  27648106 ctaatctaggaaacaagtg 27648088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 16555203 - 16555106
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  16555203 atgatgtgtggagccaaggagagtggtaaccaccaaacaaagtgtgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtg 16555106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 16578352 - 16578449
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  16578352 atgatgtgtggagccaaggagagtggtaaccaccaaacaaagtgtgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtg 16578449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 16617028 - 16616931
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  16617028 atgatgtgtggagccaaggagagtggtaaccaccaaacaaagtgtgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtg 16616931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 16631759 - 16631662
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  16631759 atgatgtgtggagccaaggagagtggtaaccaccaaacaaagtgtgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtg 16631662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 16653446 - 16653349
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagtg 277  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  16653446 atgatgtgtggagccaaggagagtggtaaccaccaaacaaagtgtgtgcaagcaacaaacaacaaaacaccacctagatctaatctaggaaacaagtg 16653349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 6097248 - 6097383
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| ||| ||||||||||||| |||||||| |||||||||||||||| ||| ||| |||||||| || |||||||||||||||| ||||||||    
T  6097248 tgttgtgaattccgaacgaaaccacaccgatgcaaagaatgatgtgtggagcaacggaaagtagtaaccactaa-caaagtgtgtgcaagctataatcaa 6097346  T
Q  242 c-aaaacaccaactagatctaatctaggaaacaagtg 277  Q
    | |||||| || || ||||||||||||| ||||||||    
T  6097347 caaaaacagcaccttgatctaatctaggtaacaagtg 6097383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 2171350 - 2171456
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||| |||| || ||||||||||    
T  2171350 cacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaaccactaa-caaagtgtgtgcaagcaataatcaacaataacagcacctagatctaa 2171448  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  2171449 tctaggaa 2171456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 3072580 - 3072693
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaaaac-accaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||  | ||  |||||||||    
T  3072580 cacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccactaac-aaagtgtgtgcaagcaataatcaacaaaaatagcacatagatctaa 3072678  T
Q  263 tctaggaaacaagtg 277  Q
    |||||||||||||||    
T  3072679 tctaggaaacaagtg 3072693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 412456 - 412368
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaa 230  Q
    |||||||||| ||  |||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  412456 tgttgtgaattcctaacgaaaccacaccaataccaagtatgatgtgtggagcaaaggaaagtagtaaccaccaaacaaagtgtgtgcaa 412368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 25421642 - 25421542
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  25421642 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 25421543  T
Q  277 g 277  Q
    |    
T  25421542 g 25421542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 33341935 - 33342035
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||  |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  33341935 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 33342034  T
Q  277 g 277  Q
    |    
T  33342035 g 33342035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 6136135 - 6136216
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtg---tgtgcaagcaataatcaacaaaacaccaactagat 258  Q
    |||||||||||||||| ||||||||||||||||||| |||||||   ||||||||||| || ||||||||||||| ||||||    
T  6136135 atgatgtgtggagcaacggagagtggtaaccaccaaacaaagtgtattgtgcaagcaagaaacaacaaaacaccacctagat 6136216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 6027582 - 6027482
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | |||||| |||||||||| | ||| ||||   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  6027582 atgatgtgtggagcgacggagaggggtaaccacctaacaaggtgtattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 6027483  T
Q  277 g 277  Q
    |    
T  6027482 g 6027482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 5408893 - 5408999
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | ||||||| |  ||||||||||||||||| |||| || ||||||||||    
T  5408893 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgagcacaagcaataatcaacaataacaacacctagatctaa 5408991  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  5408992 tctaggaa 5408999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 5413218 - 5413324
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | ||||||| |  ||||||||||||||||| |||| || ||||||||||    
T  5413218 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgagcacaagcaataatcaacaataacaacacctagatctaa 5413316  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  5413317 tctaggaa 5413324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 16452151 - 16452257
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || |||||||||||||| |||||| ||| |||||||  || |||||||  | ||||||||||||||||| |||| || ||||||||||    
T  16452151 cacaccaatacgaactatgatgtgtggagtaaaggaaagtagtaaccaataa-caaagtgaatacaagcaataatcaacaataacatcacctagatctaa 16452249  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  16452250 tctaggaa 16452257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 30834357 - 30834459
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| | | |||||||  || |||||||  ||||||||||||||||||| |||| || ||||||||||    
T  30834357 cacaccaatacgaaatatgatgtgtggagcaaaggaaaatagtaaccaataa-caaagtgaatgcaagcaataatcaacaataacagcacctagatctaa 30834455  T
Q  263 tcta 266  Q
    ||||    
T  30834456 tcta 30834459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 34167416 - 34167316
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgt---gcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| ||||   | |   |||||||| || ||||||||||||| ||||||| |||||||||| |||||    
T  34167416 atgatgtgtggagcgacggagagtggtaaccaccaaacaaaaaatattgagcaagcaaaaaacaacaaaacaccacctagatcaaatctaggaaccaagt 34167317  T
Q  277 g 277  Q
    |    
T  34167316 g 34167316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 9182857 - 9182960
Alignment:
Q  167 accaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaatct 265  Q
    |||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || |||||||||||||    
T  9182857 accaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacaacacctagatctaatct 9182955  T
Q  266 aggaa 270  Q
    |||||    
T  9182956 aggaa 9182960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 10960 - 11092
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||| ||| |||||||   | | ||||| |||||||||||||||||    
T  10960 tgttgtgaattccgtacaaaaccacaccaatacaaagtatgatatgtggagcaaaggaaagtagtaaccaatga-ctaagtgggtgcaagcaataatcaa 11058  T
Q  242 caa-aacaccaactagatctaatctaggaaacaa 274  Q
    ||| |||| || ||||||||||||||||||||||    
T  11059 caataacaacacctagatctaatctaggaaacaa 11092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 274
Target Start/End: Original strand, 8534 - 8666
Alignment:
Q  142 tgttgtgaatcccgtacgaaaccacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaa 241  Q
    |||||||||| | |||| ||||||||||||| |||||||||||  ||||||||||||| ||| |||||||   | | ||||| |||||||||||||||||    
T  8534 tgttgtgaattctgtacaaaaccacaccaatacaaagtatgatacgtggagcaaaggaaagtagtaaccaatga-ctaagtgggtgcaagcaataatcaa 8632  T
Q  242 caa-aacaccaactagatctaatctaggaaacaa 274  Q
    ||| |||| || ||||||||||||||||||||||    
T  8633 caataacaacacctagatctaatctaggaaacaa 8666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 31495142 - 31495238
Alignment:
Q  179 tatgatgtgtggagcaaaggagagtggtaaccaccaaccaaa-gtgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaa 274  Q
    ||||||||||||||||||||| ||| ||||||| |||| ||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  31495142 tatgatgtgtggagcaaaggaaagtagtaaccatcaacaaagtgtgtgtgcaagcaataatcaacaaaacagcacctagatctaatctaggaaacaa 31495238  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 8395940 - 8395840
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  8395940 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaaaaaacaacaaaacaccacctagatctaatctaggaaccaagt 8395841  T
Q  277 g 277  Q
    |    
T  8395840 g 8395840  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 7123019 - 7122919
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  7123019 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 7122920  T
Q  277 g 277  Q
    |    
T  7122919 g 7122919  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 7125238 - 7125138
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  7125238 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 7125139  T
Q  277 g 277  Q
    |    
T  7125138 g 7125138  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 8393731 - 8393631
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| | |||| |   |||||||||| || ||||||||||||| |||||||||||||||||| |||||    
T  8393731 atgatgtgtggagcgacggagagtggtaaccaccaaacgaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaccaagt 8393632  T
Q  277 g 277  Q
    |    
T  8393631 g 8393631  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 13992114 - 13992218
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||  || ||||||| |||||||||||||||||||| |||| || ||||||||||    
T  13992114 cacaccaatacgaaatatgatgtgtggagcaaaggaaagtagtaaccaataa-caaagtgagtgcaagcaataatcaacaataacagcacctagatctaa 13992212  T
Q  263 tctagg 268  Q
    ||||||    
T  13992213 tctagg 13992218  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 48143393 - 48143287
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||||||||| |||| || ||||||||||    
T  48143393 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataatcaacaataacaacacctagatctaa 48143295  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  48143294 tctaggaa 48143287  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 46147219 - 46147266
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    |||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  46147219 cacaccaatgcaaactatgatgtgtggagcaaaggaaagtagtaacca 46147266  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 56178459 - 56178565
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||   | |||||||    ||||||||||| ||||| |||| || ||||||||||    
T  56178459 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca-atatcaaagtgaacacaagcaataataaacaataacaacacctagatctaa 56178557  T
Q  263 tctaggaa 270  Q
    ||||||||    
T  56178558 tctaggaa 56178565  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 5136402 - 5136303
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaag---tgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||     || |||||||| |  |||||||||| | ||||||||||||||||||| |||||    
T  5136402 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgagcaagcaagagacaacaaaacatc-actagatctaatctaggaaccaagt 5136304  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 5138627 - 5138528
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaag---tgtgtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||     || |||||||| |  |||||||||| | ||||||||||||||||||| |||||    
T  5138627 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagcttattgagcaagcaagagacaacaaaacatc-actagatctaatctaggaaccaagt 5138529  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 26175460 - 26175507
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  26175460 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 26175507  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 29999652 - 29999699
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  29999652 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 29999699  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 48893466 - 48893513
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  48893466 cacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaacca 48893513  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 52467181 - 52467228
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaacca 211  Q
    ||||||||| |||| ||||||||||| ||||||||| |||||||||||    
T  52467181 cacaccaatacaaactatgatgtgtgaagcaaaggaaagtggtaacca 52467228  T

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Target: scaffold0565 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 2436 - 2536
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  2436 atgatgtgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 2535  T
Q  277 g 277  Q
    |    
T  2536 g 2536  T

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Target: scaffold1808 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 201 - 101
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  201 atgatgtgtggagcgacggagagtggtaaccacctaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 102  T
Q  277 g 277  Q
    |    
T  101 g 101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 3558 - 3658
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    |||||||||||||| | ||||||||||||||||| | |||||| |   |||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  3558 atgatgtgtggagcgacggagagtggtaaccaccgaacaaagtttattgtgcaagcaagaaacaacaaaacaccacctagatctaatctaggaaacaagt 3657  T
Q  277 g 277  Q
    |    
T  3658 g 3658  T

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Target: scaffold0286 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 11911 - 11804
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagat-cta 261  Q
    ||||||||| | || ||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||| |||| || |||||| |||    
T  11911 cacaccaatacgaactatgatgtgtggagcaaaggaaagtagtaaccactaa-caaagtgtgtgcaagcaataatcaacaataacagcacctagatacta 11813  T
Q  262 atctaggaa 270  Q
    |||||||||    
T  11812 atctaggaa 11804  T

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Target: scaffold0137 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 6611 - 6511
Alignment:
Q  180 atgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgt---gtgcaagcaataatcaacaaaacaccaactagatctaatctaggaaacaagt 276  Q
    ||||| |||||||| | ||||||||||||||||||| |||||| |   |||||||||| || |||||| |||||| ||||||| ||||||||||||||||    
T  6611 atgatatgtggagcgacggagagtggtaaccaccaaacaaagtttattgtgcaagcaagaaacaacaatacaccacctagatccaatctaggaaacaagt 6512  T
Q  277 g 277  Q
    |    
T  6511 g 6511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 1261 - 1157
Alignment:
Q  164 cacaccaatgcaaagtatgatgtgtggagcaaaggagagtggtaaccaccaaccaaagtgtgtgcaagcaataatcaacaa-aacaccaactagatctaa 262  Q
    ||||||||| | || ||||||||||||| ||||||| ||| |||||||   || || |||  ||||||||||||||||||| ||||||| ||||||||||    
T  1261 cacaccaatacgaactatgatgtgtggaacaaaggatagtagtaaccaatgac-aatgtgaatgcaagcaataatcaacaataacaccacctagatctaa 1163  T
Q  263 tctagg 268  Q
    ||||||    
T  1162 tctagg 1157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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