View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_18 (Length: 366)
Name: NF4533_low_18
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 4741704 - 4742024
Alignment:
| Q |
18 |
cacagacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtgatcatcaaaactatttct---aggtaacttaatacccaattaaactaa |
114 |
Q |
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| T |
4741704 |
cacagacctcaaaaacttgttgaagtagaaagttagaaactgttcatttgtcatcatcaaaactatatttttaaggtaatt--attcccaattaaaccaa |
4741801 |
T |
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| Q |
115 |
caaattattgggaaacttgtcacatcatcaaaagacttattttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaatt |
214 |
Q |
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| T |
4741802 |
caaatcagtgggaaacttgtcacatcattaaaagacttcttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaatt |
4741901 |
T |
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| Q |
215 |
caaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtatggtccatgggactggaaaattgaagtgcttccgaacaagttca |
314 |
Q |
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| T |
4741902 |
caaaattaggaaaattcaaatgtttacatcactttcactttcaattttactatctatggtccatgggattggaaaactgaagtgcttccgaacaagttca |
4742001 |
T |
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| Q |
315 |
tcgtctatatggaggctaccaaa |
337 |
Q |
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| T |
4742002 |
tcgtctgtatggaggctaccaaa |
4742024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 172 - 337
Target Start/End: Original strand, 4721031 - 4721196
Alignment:
| Q |
172 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtat |
271 |
Q |
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| T |
4721031 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtat |
4721130 |
T |
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| Q |
272 |
ggtccatgggactggaaaattgaagtgcttccgaacaagttcatcgtctatatggaggctaccaaa |
337 |
Q |
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| T |
4721131 |
ggtccatgggactggaaaactgaagtgcttccgaacaagttcatcgtctttatggaggctaccaaa |
4721196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 4742782 - 4742854
Alignment:
| Q |
21 |
agacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtg--atcatcaaaactatttctaggt |
91 |
Q |
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| T |
4742782 |
agacctcaagaacatgttgaagtataaagttagaaattattcagttgtgtcatcatcaaaactatttccaggt |
4742854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 4726160 - 4726262
Alignment:
| Q |
154 |
ttttgtttgtt-aatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcac |
252 |
Q |
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| T |
4726160 |
ttttgtttgtttaatatgc-gagtttagtaaatcgatttgctgtctcattcggtttggaatt-gaaattggaaaaattcagatgtttacaacagtttcac |
4726257 |
T |
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| Q |
253 |
tttca |
257 |
Q |
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||||| |
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| T |
4726258 |
tttca |
4726262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 4722380 - 4722450
Alignment:
| Q |
63 |
atttgtgatcatcaaaactatttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgt |
134 |
Q |
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| T |
4722380 |
atttgtcatcattaaaactatttccaggtaact-actactcaattaaaccaacaaattagtgggaaacttgt |
4722450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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