View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_2 (Length: 687)

Name: NF4533_low_2
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_2
NF4533_low_2
[»] chr8 (1 HSPs)
chr8 (19-673)||(41966030-41966679)
[»] chr2 (47 HSPs)
chr2 (28-593)||(10336024-10336577)
chr2 (36-336)||(9321167-9321467)
chr2 (38-336)||(9060774-9061072)
chr2 (27-336)||(9316210-9316519)
chr2 (33-332)||(9283833-9284132)
chr2 (31-332)||(8573142-8573443)
chr2 (36-333)||(9274706-9275000)
chr2 (36-251)||(9328787-9329002)
chr2 (385-669)||(8572813-8573101)
chr2 (27-336)||(9292113-9292419)
chr2 (381-593)||(9357710-9357922)
chr2 (31-171)||(16269272-16269412)
chr2 (25-158)||(10347971-10348104)
chr2 (378-519)||(10372388-10372529)
chr2 (28-329)||(12012192-12012493)
chr2 (28-172)||(12005921-12006065)
chr2 (28-205)||(9065362-9065540)
chr2 (382-450)||(12005658-12005726)
chr2 (26-332)||(7115282-7115588)
chr2 (274-336)||(9357612-9357674)
chr2 (381-454)||(9275051-9275124)
chr2 (378-519)||(10348309-10348450)
chr2 (381-451)||(9283720-9283790)
chr2 (401-527)||(9316578-9316704)
chr2 (274-336)||(9329028-9329090)
chr2 (388-450)||(12018422-12018484)
chr2 (381-450)||(10353651-10353720)
chr2 (27-91)||(10353297-10353361)
chr2 (136-336)||(10353412-10353612)
chr2 (382-438)||(14550902-14550958)
chr2 (388-451)||(8579032-8579095)
chr2 (627-673)||(10372676-10372723)
chr2 (382-441)||(12012095-12012154)
chr2 (202-345)||(12018506-12018649)
chr2 (405-448)||(16269456-16269499)
chr2 (381-519)||(9292458-9292596)
chr2 (230-332)||(11987124-11987226)
chr2 (624-668)||(9292719-9292764)
chr2 (627-673)||(9316816-9316866)
chr2 (478-535)||(17565557-17565614)
chr2 (411-519)||(7115114-7115222)
chr2 (393-441)||(9365188-9365236)
chr2 (276-336)||(10372301-10372361)
chr2 (382-450)||(11987021-11987089)
chr2 (281-336)||(10348227-10348282)
chr2 (136-213)||(10372161-10372238)
chr2 (624-673)||(14551111-14551160)
[»] scaffold0667 (1 HSPs)
scaffold0667 (25-673)||(4663-5300)
[»] chr1 (11 HSPs)
chr1 (36-337)||(29467428-29467728)
chr1 (36-451)||(29423459-29423865)
chr1 (119-333)||(29452955-29453169)
chr1 (36-337)||(29442965-29443269)
chr1 (550-673)||(29423934-29424055)
chr1 (568-673)||(29442667-29442770)
chr1 (387-441)||(29442867-29442921)
chr1 (574-673)||(29452659-29452756)
chr1 (382-441)||(29452859-29452918)
chr1 (390-441)||(29467333-29467384)
chr1 (382-431)||(29463510-29463559)
[»] chr3 (3 HSPs)
chr3 (148-336)||(37462801-37462989)
chr3 (392-519)||(37463039-37463166)
chr3 (21-92)||(37462674-37462745)
[»] chr4 (4 HSPs)
chr4 (276-336)||(26575304-26575364)
chr4 (620-673)||(26575666-26575720)
chr4 (389-450)||(26575411-26575472)
chr4 (26-68)||(26575048-26575090)


Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 19 - 673
Target Start/End: Complemental strand, 41966679 - 41966030
Alignment:
Q  19 cttttgacctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  41966679 cttttgacctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcgacaattaaacaagggtgtaatccatcaagttccttg 41966580  T
Q  119 gtcattatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966579 gtcattatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttt 41966480  T
Q  219 tagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaa 318  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41966479 tagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtgatcgctggttaatggatcaaa 41966380  T
Q  319 accgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaataggaatagggagaaaagggataatccgatgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  41966379 accgaatccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaa------tagggagaaaagggataatccgatgt 41966286  T
Q  419 ttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtagaggaggccgttacatgaac 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41966285 ttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgcagaggaggccgttacatgaac 41966186  T
Q  519 ccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagt 618  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966185 ccagaagagtgatgttggtgctgtgacgcaagaaaggatggttgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagt 41966086  T
Q  619 gttgagtcgaaggattaaggatcgattgagggatttt-tgaggtgaaggttgatga 673  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41966085 gttgagtcgaaggattaaggatcgattgagggattttctgaggtgaaggttgatga 41966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 1e-86; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 28 - 593
Target Start/End: Original strand, 10336024 - 10336577
Alignment:
Q  28 tatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatc 127  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||  ||||||||  ||||||||||| | ||||| |||||||||| |   |||||||||    
T  10336024 tatttcatcaggaagaggaacctcattgaaaatctcaagtgatagattaaacgcagcaattaaacaaggttgtaacccatcaagtttcggagtcattatc 10336123  T
Q  128 cagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaa 227  Q
    |||||||||||||| | ||||||||| ||||||||| ||| ||||||||||  |||||||||    |||| | ||||||| |||||  |||| ||||| |    
T  10336124 cagtgaagagaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttccaagagtttgttttcgagctga 10336223  T
Q  228 atagtctgacatgtgaat---caaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaa 324  Q
    | ||| | | ||||||||   ||||||||  | ||||| |||| |   |||||||||||||||||||||||||||||  || ||||| ||||||||||||    
T  10336224 agagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaa 10336323  T
Q  325 tccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaataggaatagggagaaaagggataatccgatgtttacag 424  Q
    ||||||||||||  | ||      ||||| ||||| || |||||||    ||||     ||||||||| ||||||| ||||||||||||||||||||| |    
T  10336324 tccgtgaacgcataaagc------gatgttgtcagattgagaacga----gagg-----gaataggaagagggagataagggataatccgatgtttacgg 10336408  T
Q  425 atgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtagaggaggccgttacatgaacccagaa 524  Q
    ||| |||| || ||||||| |||||||||   |  ||||||||||| |||| ||||||||||||||||||||  ||||||||| || |||||||| ||||    
T  10336409 atggtaggattacagaatgcgatttcattggcggagtaagggttagtgaaagcgatttcgccattggagatggcgaggaggccattgcatgaaccaagaa 10336508  T
Q  525 gagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacggcggtggttaggttagagaaat 593  Q
    ||| ||||||| |||||||  | | ||||||||| ||||||||||| |||||||||||||||| |||||    
T  10336509 gagcgatgttgttgctgtggtggatgaaaggatggttgagtggaacagcggtggttaggttagggaaat 10336577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 36 - 336
Target Start/End: Original strand, 9321167 - 9321467
Alignment:
Q  36 caggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaag 135  Q
    ||||||||||||||   |||||||| |||||||||| |||||| || ||||||||| || | ||||||||| |||||| ||| |||||||||||||||||    
T  9321167 caggaagaggaaccacattgaaaatttcaagtgttaggttaaatgcaacaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaag 9321266  T
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctg 235  Q
    |||||| | ||||||||||||||||  ||||||||||  |||||  |||||||| |||||||||||||||||||||||  || ||||||| || ||||||    
T  9321267 agaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctg 9321366  T
Q  236 acatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgc 335  Q
    |||||||||||| ||  ||||   ||| ||       |||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||    
T  9321367 acatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgc 9321466  T
Q  336 a 336  Q
    |    
T  9321467 a 9321467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 38 - 336
Target Start/End: Complemental strand, 9061072 - 9060774
Alignment:
Q  38 ggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaagag 137  Q
    |||||||||||||  |||||||| |||||||| | |||||| || |||||||| ||| | | | | |||||||||| ||||| ||| | |||||||||||    
T  9061072 ggaagaggaacctcattgaaaatttcaagtgtgaggttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagag 9060973  T
Q  138 aattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctgac 237  Q
    |||| ||||||||||||||||||| |||| |||| | |||||| |||||||| ||||||||| |||||||||||||  ||||  ||||||| || |||||    
T  9060972 aattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgac 9060873  T
Q  238 atgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
    |||||||||| ||  |  |  |||| || ||||  |||||| ||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||    
T  9060872 atgtgaatcataaaaaatgttttgtcgagcaaataaccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgca 9060774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 9316210 - 9316519
Alignment:
Q  27 ctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattat 126  Q
    |||||||||||||||||||||||   ||||||||||||||||||| ||||||||| ||||| |||||| ||||| |  | |||  || ||  |||||||     
T  9316210 ctatttcagcaggaagaggaaccacattgaaaatctcaagtgttaggttaaacgcgacaatgaaacaagggtgtgactcttcactttgctgagtcattac 9316309  T
Q  127 ccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagcta 226  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||| | |||||| |||||||| ||||||||| |||||||||||||  ||||  |||||    
T  9316310 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagcta 9316409  T
Q  227 aatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatc 326  Q
    || || ||||||||||||||| ||  ||||   ||   |||      |||||| |||||||||||||||||||| |  ||| |||||||||||||||| |    
T  9316410 aagagactgacatgtgaatcataaaaagagcaatgaccatcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagc 9316509  T
Q  327 cgtgaacgca 336  Q
    ||||||||||    
T  9316510 cgtgaacgca 9316519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 33 - 332
Target Start/End: Complemental strand, 9284132 - 9283833
Alignment:
Q  33 cagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtg 132  Q
    ||||||||||||||||||  ||||||| ||| ||||||| ||||||||| |||||||||||| ||| | | |||||||| | |||   ||||||||||||    
T  9284132 cagcaggaagaggaacctctttgaaaacctctagtgttaggttaaacgcgacaattaaacaaaggtctgacccatcaagattcttttccattatccagtg 9284033  T
Q  133 aagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagt 232  Q
    || |||||| | ||||||||||||||||| |||||||||||||| ||  || |||||  | ||||||||||||||||||||  |||| ||||| || |||    
T  9284032 aatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggcataataggaattattttccacgagtttgttttggagctgaagagt 9283933  T
Q  233 ctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 332  Q
    ||| ||||||||| | ||  ||||  |||| ||   |    ||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||    
T  9283932 ctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 31 - 332
Target Start/End: Complemental strand, 8573443 - 8573142
Alignment:
Q  31 ttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccag 130  Q
    |||| ||||||||||||||| || |||||| |||||||| | |||||| || |||||||| ||| | | | | |||||||||| ||||| ||| | ||||    
T  8573443 ttcaacaggaagaggaacctcgtagaaaatttcaagtgtgaggttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccag 8573344  T
Q  131 tgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaata 230  Q
    ||||||||||| ||||||||||||||||||| |||| |||| | |||||| || ||| | ||||||||| |||||||||||||  ||||  ||||||| |    
T  8573343 tgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagctaaaga 8573244  T
Q  231 gtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtg 330  Q
    || |||||||||||||| ||  || |   ||||||   |   |||||||||||| ||||||||||||||||  ||||||| ||||||||||||| |||||    
T  8573243 gtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtg 8573144  T
Q  331 aa 332  Q
    ||    
T  8573143 aa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 36 - 333
Target Start/End: Original strand, 9274706 - 9275000
Alignment:
Q  36 caggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaag 135  Q
    ||||||||||||||   |||||||| |||||||||| ||||||||| |||||||||||| ||||| |  |||||| |||| | ||||||| |||||||||    
T  9274706 caggaagaggaaccacattgaaaatatcaagtgttaggttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaag 9274805  T
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctg 235  Q
    |||||| | |||||||| |||||||| |||| |||| | |||||| |||||||| |||||||||||||||||||||||  ||||  |||| || |||||     
T  9274806 agaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctc 9274905  T
Q  236 acatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaac 333  Q
    |||||||| |||||||   ||   |||  ||||    |||| ||||||||||| ||||| ||||||| || ||| ||||||||||| || ||||||||    
T  9274906 acatgtgattcaaaag---agtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 9328787 - 9329002
Alignment:
Q  36 caggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaag 135  Q
    ||||||||||||||   |||||||| |||||||||| ||||||||| ||||||||| || | ||||||||| |||||| ||| |||||||||||||||||    
T  9328787 caggaagaggaaccacattgaaaatttcaagtgttaggttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaag 9328886  T
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctg 235  Q
    |||||| | ||| ||||||||| || |||||||||||  |||||| || |||||    |||||||||||||| |||||  |||||||| | || ||||||    
T  9328887 agaattctcaaccaaaacccccgtgttttgagcatagacaagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctg 9328986  T
Q  236 acatgtgaatcaaaag 251  Q
    ||||||| | ||||||    
T  9328987 acatgtggaacaaaag 9329002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 385 - 669
Target Start/End: Complemental strand, 8573101 - 8572813
Alignment:
Q  385 aataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcg 484  Q
    |||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| || |||||  ||   ||| | ||| | ||  ||| |||||       
T  8573101 aataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaa 8573002  T
Q  485 ccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaa---cggcggtggtta 581  Q
    ||||| || |||  ||||||||||||||||||||| | |||||| || |||||||||| ||   |||||||||| ||||||||||   ||||||||||||    
T  8573001 ccattagaaatggcgaggaggccgttacatgaaccgataagagtaattttggtgctgttaccggagaaaggatggttgagtggaaactcggcggtggtta 8572902  T
Q  582 ggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttg 669  Q
    | | ||||||||| |||||||  ||||||| |||   |||| |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  8572901 gatcagagaaatcatcatcgatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttg 8572813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 9292113 - 9292419
Alignment:
Q  27 ctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattat 126  Q
    ||||||||||||||| |||||||   |||||| |||||||||||| |||||| || ||||| |||||| ||||| |  || ||| |  |   |||||||     
T  9292113 ctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaattgtccgagtcattac 9292212  T
Q  127 ccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagcta 226  Q
    |||||| | |||||| ||||||||||||||||| | |||| |||| | |||||| |||||||| || ||||| ||||||||||||||  |||| |||||     
T  9292213 ccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttttggagctg 9292312  T
Q  227 aatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatc 326  Q
    || ||||| || |||| ||||||||   ||   ||| | ||      ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |    
T  9292313 aagagtctcacctgtggatcaaaag---agtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagc 9292409  T
Q  327 cgtgaacgca 336  Q
    ||||||||||    
T  9292410 cgtgaacgca 9292419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 381 - 593
Target Start/End: Original strand, 9357710 - 9357922
Alignment:
Q  381 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgat 480  Q
    |||| ||||||| |||||| |||||||||||  ||||||||| ||||||| ||||||||| || |||||| ||   | ||| ||| |    |||| ||||    
T  9357710 tagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 9357809  T
Q  481 ttcgccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacggcggtggtt 580  Q
    ||||||||||||||||  ||||||||||||||||||||| | |||||  ||||||||||||| ||||  |||||| || ||||||||||||||||||||     
T  9357810 ttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtgaaagggtggttgagtggaacggcggtggtg 9357909  T
Q  581 aggttagagaaat 593  Q
    | ||| |||||||    
T  9357910 aagtttgagaaat 9357922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 16269272 - 16269412
Alignment:
Q  31 ttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccag 130  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||||| || | ||||| || ||||||| ||| | |||||| |||    
T  16269272 ttcagcaggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcgacgattaaagaaggatgtaacccgtcaagtttcttcgccattatacag 16269371  T
Q  131 tgaagagaattgtgaacaaaaacccccatggtttgagcata 171  Q
     ||| |||||| | |||||||||||||||| ||||||||||    
T  16269372 cgaatagaattctcaacaaaaacccccatgatttgagcata 16269412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 10347971 - 10348104
Alignment:
Q  25 acctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcatt 124  Q
    |||||||||| |||||||||||||||  |||||||| |||||||| | ||||||||| ||||||||| || | ||||| |||||||||| ||| |||||     
T  10347971 acctatttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaacgcgacaattaaagaaggatgtaacccatcaagtttcttcgtcata 10348070  T
Q  125 atccagtgaagagaattgtgaacaaaaaccccca 158  Q
    |||||||||| |||||| | ||||||||||||||    
T  10348071 atccagtgaatagaattctcaacaaaaaccccca 10348104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 10372388 - 10372529
Alignment:
Q  378 gaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatc 477  Q
    ||||||||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||   |||  ||||||||  |||| |    
T  10372388 gaataggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagc 10372487  T
Q  478 gatttcgccattggagatgtagaggaggccgttacatgaacc 519  Q
    || || ||| ||| |||||  |||||||||||||||||||||    
T  10372488 gaatttgccgttgcagatggcgaggaggccgttacatgaacc 10372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 28 - 329
Target Start/End: Complemental strand, 12012493 - 12012192
Alignment:
Q  28 tatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatc 127  Q
    ||||||| ||||||  |||||||  ||||||| ||||||||||| ||||||||| ||||||||||   | ||||| |||||| | | |||   | |||||    
T  12012493 tatttcatcaggaaatggaacctcattgaaaagctcaagtgttaggttaaacgcgacaattaaacggggatgtaacccatcaggattcttcaccgttatc 12012394  T
Q  128 cagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaa 227  Q
    || ||||||||||| | ||||||||| ||||||||| |||||||| ||||| ||||    || || |||| || ||||||||||||  |||| ||| | |    
T  12012393 caatgaagagaattctcaacaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtga 12012294  T
Q  228 atagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatcc 327  Q
    | |||||||||| ||||||||||||||||  ||||  |||||   |||||||||||||||  || ||||| |||  || ||| |||||||| || |||||    
T  12012293 agagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaaggatcaaagccaaatcc 12012194  T
Q  328 gt 329  Q
    ||    
T  12012193 gt 12012192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 12006065 - 12005921
Alignment:
Q  28 tatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatc 127  Q
    ||||||| |||||| |||||||| |||||||| ||||||||||| ||||||||| | ||||||||   | ||||| |||||| ||| ||||  ||| |||    
T  12006065 tatttcatcaggaaaaggaacctcgttgaaaacctcaagtgttaggttaaacgcgaaaattaaacgctgatgtaacccatcaggtttcttgaccatcatc 12005966  T
Q  128 cagtgaagagaattgtgaacaaaaacccccatggtttgagcatag 172  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||    
T  12005965 cagtgaagagaattctcaacaaaaacccccatggttagagcatag 12005921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 9065540 - 9065362
Alignment:
Q  28 tatttcagcaggaagaggaacctgg-ttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattat 126  Q
    ||||||||||||||| |||||||   |||||||| |||||||| | |||||| || ||||||||| || | ||||| | ||| |||| ||| ||||||||    
T  9065540 tatttcagcaggaaggggaacctcaattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattat 9065441  T
Q  127 ccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttc 205  Q
    | |||||| |||||| | |||||||||||||||| | | | ||||||||||||| || |||||  | ||||||||||||    
T  9065440 caagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttc 9065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 12005726 - 12005658
Alignment:
Q  382 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 450  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  12005726 aggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttc 12005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 26 - 332
Target Start/End: Complemental strand, 7115588 - 7115282
Alignment:
Q  26 cctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcatta 125  Q
    |||| |||| |||||||||||||||   |||||  ||||||||||| ||||||||| |||||||||||| ||||| |  ||||||||| |   | |||||    
T  7115588 cctaattcatcaggaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcgacaattaaacaagggtgtgactcatcaagtttccgagacatta 7115489  T
Q  126 tccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagct 225  Q
    ||||||||| |||| |    |||||||||||  |||||| |  ||||| | || |||||||||||   ||||| ||||||||||||||  ||||  | ||    
T  7115488 tccagtgaacagaagtaaatacaaaaaccccattggtttcaaaatagtgaggaacatacggcattacaggaatcattttccacgagtttgttttcaaact 7115389  T
Q  226 aaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaat 325  Q
     || |||||||  ||||||||| ||  ||||  | || |||   |  |||||||||||||||| |||||||||||    ||||| ||||||||||||||     
T  7115388 gaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaag 7115289  T
Q  326 ccgtgaa 332  Q
    |||||||    
T  7115288 ccgtgaa 7115282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 9357612 - 9357674
Alignment:
Q  274 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 9357674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 9275051 - 9275124
Alignment:
Q  381 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcattt 454  Q
    |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||    
T  9275051 taggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcattt 9275124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 378 - 519
Target Start/End: Original strand, 10348309 - 10348450
Alignment:
Q  378 gaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatc 477  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| | ||||||||||||||| ||||||||| ||   || || ||| |  | |||| |    
T  10348309 gaataggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaac 10348408  T
Q  478 gatttcgccattggagatgtagaggaggccgttacatgaacc 519  Q
    |||| | ||  ||||||||  |||||||||||||||||||||    
T  10348409 gattacccctgtggagatggcgaggaggccgttacatgaacc 10348450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 9283790 - 9283720
Alignment:
Q  381 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 451  Q
    |||| ||||||| |||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||    
T  9283790 tagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttca 9283720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 527
Target Start/End: Original strand, 9316578 - 9316704
Alignment:
Q  401 aaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtaga 500  Q
    ||||||||||| |||||||||| | ||||||||||||||| ||||||||| ||   | ||||||| |    |||| ||||||  |||||||| |||  ||    
T  9316578 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatttgaccattggaaatggcga 9316677  T
Q  501 ggaggccgttacatgaacccagaagag 527  Q
    | ||||||||||||||||| |||||||    
T  9316678 gaaggccgttacatgaaccgagaagag 9316704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 9329028 - 9329090
Alignment:
Q  274 ccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
    ||||| ||||||||||||||||||||| | || ||| |||||||||||||| |||||||||||    
T  9329028 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 9329090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 12018484 - 12018422
Alignment:
Q  388 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 450  Q
    |||||||||||||  |||||||||||||||||||| ||||| |||||||||||| | ||||||    
T  12018484 aggaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttc 12018422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 10353651 - 10353720
Alignment:
Q  381 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 450  Q
    |||| ||||||| |||||||||||||||||||||||| |||| | |||| |||||||| | |||||||||    
T  10353651 tagggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttc 10353720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 10353297 - 10353361
Alignment:
Q  27 ctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaa 91  Q
    |||||||| |||||||||||||||  |||||| |||||||||||| ||||||||| | |||||||    
T  10353297 ctatttcatcaggaagaggaacctcattgaaagtctcaagtgttaggttaaacgcgagaattaaa 10353361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 336
Target Start/End: Original strand, 10353412 - 10353612
Alignment:
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctg 235  Q
    |||||| | ||||||||||||||| |||  |||||||||||||| ||| ||||   | ||||||| |||||| |||||  ||||  |||| || ||||||    
T  10353412 agaattctcaacaaaaacccccattgttaaagcatagtaaagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtctg 10353511  T
Q  236 acatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgc 335  Q
    ||||||| |||| ||  || |  |||| |||| |   |   |||||||||||||||||||||||||| || ||  | |||||||||||| || |||||||    
T  10353512 acatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgc 10353611  T
Q  336 a 336  Q
    |    
T  10353612 a 10353612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 14550902 - 14550958
Alignment:
Q  382 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttcca 438  Q
    ||||||| |||||||||||  ||||||||| |||||||||| |||||||||||||||    
T  14550902 aggaataagaatagggagatcagggataatgcgatgtttacggatgttagggttcca 14550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 8579095 - 8579032
Alignment:
Q  388 aggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttca 451  Q
    |||||| |||||| |||||||||  |||||||||| |||||||||||||||||| | |||||||    
T  8579095 aggaatggggagataagggataactcgatgtttacggatgttagggttccagaaagcgatttca 8579032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 627 - 673
Target Start/End: Original strand, 10372676 - 10372723
Alignment:
Q  627 gaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatga 673  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  10372676 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatga 10372723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 12012154 - 12012095
Alignment:
Q  382 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 441  Q
    |||||||| || |||||||  |||||||||| ||||||||| ||||||||||||||||||    
T  12012154 aggaatagaaacagggagattagggataatctgatgtttacggatgttagggttccagaa 12012095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 345
Target Start/End: Complemental strand, 12018649 - 12018506
Alignment:
Q  202 tttccacgagttgtttttagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcg 301  Q
    ||||||||||||  |||| ||| || | |||||||||| |||||||||||||  |   ||| |||||| | |||||||||||||||  ||||| |||||     
T  12018649 tttccacgagttcgtttttgaggtatagagtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaagtttataatca 12018550  T
Q  302 ctggttaatggatcaaaaccgaatccgtgaacgcaataggcaaa 345  Q
      ||  || |||||||||||||| |||| ||||||| |||||||    
T  12018549 gaggacaaaggatcaaaaccgaagccgtaaacgcaaaaggcaaa 12018506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 448
Target Start/End: Original strand, 16269456 - 16269499
Alignment:
Q  405 ggataatccgatgtttacagatgttagggttccagaatgtgatt 448  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  16269456 ggataatccaatgtttacaggtgttagggttccagaatgtgatt 16269499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 519
Target Start/End: Original strand, 9292458 - 9292596
Alignment:
Q  381 taggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgat 480  Q
    |||| |||| || ||||||||||||||||||||||||||||    ||||||||||| ||| ||||||||| ||   | ||||||| |  | |||   |||    
T  9292458 tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat 9292557  T
Q  481 ttcgccattggagatgtagaggaggccgttacatgaacc 519  Q
    || || |||||| |||  |||||||||||||||||||||    
T  9292558 ttggctattggaaatggcgaggaggccgttacatgaacc 9292596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 11987226 - 11987124
Alignment:
Q  230 agtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgt 329  Q
    |||||||||| |||||||||||||  |   ||| |||||| | ||||||||||||||| |||||||||||||   |  || |||||||| ||||||||||    
T  11987226 agtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgatgagtttgtaatcggatgaaaaaggatcaaagccgaatccgt 11987127  T
Q  330 gaa 332  Q
    |||    
T  11987126 gaa 11987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 668
Target Start/End: Original strand, 9292719 - 9292764
Alignment:
Q  624 gtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggtt 668  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  9292719 gtcgaaggattaaggatcggttgagggaatttttgaggtgaaggtt 9292764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 673
Target Start/End: Original strand, 9316816 - 9316866
Alignment:
Q  627 gaaggattaaggatcgattgaggg----atttttgaggtgaaggttgatga 673  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  9316816 gaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatga 9316866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 535
Target Start/End: Complemental strand, 17565614 - 17565557
Alignment:
Q  478 gatttcgccattggagatgtagaggaggccgttacatgaacccagaagagtgatgttg 535  Q
    ||||| ||| ||||||||  ||||||| ||||||||||||||||||||||| ||||||    
T  17565614 gattttgccgttggagatacagaggagaccgttacatgaacccagaagagtaatgttg 17565557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 519
Target Start/End: Complemental strand, 7115222 - 7115114
Alignment:
Q  411 tccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtagaggaggccgtt 510  Q
    |||||||||||| | |||||| |||||||| |||||||||| ||  ||  | ||| |  |  ||| |||||| |||||||||||||  ||||||||||||    
T  7115222 tccgatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgtt 7115123  T
Q  511 acatgaacc 519  Q
    |||||||||    
T  7115122 acatgaacc 7115114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 9365188 - 9365236
Alignment:
Q  393 tagggagaaaagggataatccgatgtttacagatgttagggttccagaa 441  Q
    |||| ||| ||||||| ||||||||||||| ||||||||||||||||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaa 9365236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 10372301 - 10372361
Alignment:
Q  276 aagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
    ||||||||||||||||||||| ||||| || ||| | |||||||||||| || ||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgca 10372361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 11987089 - 11987021
Alignment:
Q  382 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 450  Q
    ||||| ||| ||| |||||  |||||||||||||||||||| | |||||||||||||||| | ||||||    
T  11987089 aggaaaagggataaggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttc 11987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 10348227 - 10348282
Alignment:
Q  281 attctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
    |||||||||||||||||||| | || || | ||||||||||||| |||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgca 10348282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 10372161 - 10372238
Alignment:
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagtt 213  Q
    |||||||| |||||||||||||||||| |||  ||| | |||| | ||||||||  | |||||||| |||||||||||    
T  10372161 agaattgtcaacaaaaacccccatggtgtgataatactgaagaacgtacggcatagtaggaattatcttccacgagtt 10372238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 673
Target Start/End: Original strand, 14551111 - 14551160
Alignment:
Q  624 gtcgaaggattaaggatcgattgagggatttttgaggtgaaggttgatga 673  Q
    |||||||||||||||| | ||||||||| |||| |||||||| |||||||    
T  14551111 gtcgaaggattaaggaacaattgagggaatttttaggtgaagtttgatga 14551160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 25 - 673
Target Start/End: Original strand, 4663 - 5300
Alignment:
Q  25 acctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcatt 124  Q
    |||||||||  |||||||||||||||  |||||||| |||||||||| |||||| || ||||||| | || | ||||| |||||||||| ||| | ||||    
T  4663 acctatttcgtcaggaagaggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagtttctttgccatt 4762  T
Q  125 atccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagc 224  Q
    |||||||||| |||||  | ||| ||||||||||||||||||||| ||  ||| || ||||||||  | ||||||||||||||||||||| ||||  |||    
T  4763 atccagtgaatagaatcctcaaccaaaacccccatggtttgagcaaagacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagc 4862  T
Q  225 taaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaa 324  Q
    |||| ||||| ||||||| |||| ||  || |  |||| ||   |   ||||||||| |||||||| ||||||||||| |||||| ||||||||||||||    
T  4863 taaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaa 4962  T
Q  325 tccgtgaacgcaataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaataggaatagggagaaaagggataatccgatgtttacag 424  Q
     |||||||||||  |||   |||| ||||||   | |  |||||||   |||| ||||||  |||    ||||||||||||||||||  ||||||||| |    
T  4963 gccgtgaacgcataaggagcagttcatgtcg---gatggagaacga---ggagtaatagg--tag----agggagaaaagggataatgtgatgtttacgg 5050  T
Q  425 atgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggagatgtagaggaggccgttacatgaacccagaa 524  Q
    |||||||||||||||| ||||||||| ||   | ||| ||| |    || | |||||||||| ||||| | |  ||||||||||||||||||||| | ||    
T  5051 atgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagcgatttcgccgttggaaacggcgaggaggccgttacatgaaccgataa 5150  T
Q  525 gagtgatgttggtgctgtgacgcaagaaaggatgattgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgag 624  Q
    |||  ||||||||||||| ||||  |||||| || |||||||||||||||||||| ||||| |||||||| || ||||  ||||||| ||  |   ||||    
T  5151 gagcaatgttggtgctgttacgcgtgaaagggtggttgagtggaacggcggtggtgaggtttgagaaatcatcttcgatttggtagatattggatctgag 5250  T
Q  625 tcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatga 673  Q
    ||||||||| ||||||| |||||||| ||||||| |||||||||||||||    
T  5251 tcgaaggatgaaggatctattgagggaatttttgcggtgaaggttgatga 5300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 36 - 337
Target Start/End: Complemental strand, 29467728 - 29467428
Alignment:
Q  36 caggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaag 135  Q
    |||||||||||||||  ||||||||||||||  ||| ||||||||| | ||||||||||   ||||| |||||||||| |||  |||||||||| |||||    
T  29467728 caggaagaggaacctcattgaaaatctcaagctttaggttaaacgcgataattaaacaagattgtaacccatcaagtttcttcttcattatccaatgaag 29467629  T
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctg 235  Q
    |||||| | |||||||||| |||||||||||| |||||||||||  |||||||| || | || || |||||| |||||  |||| ||||| || ||| |     
T  29467628 agaattctcaacaaaaaccaccatggtttgaggatagtaaagagagtacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgta 29467529  T
Q  236 acatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgc 335  Q
    ||||||||||||  |||   | | ||| | |  |   | ||||||||||||| ||||||||||||   ||||||||||||||||||||| ||||||||||    
T  29467528 acatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagagattctga-gagtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgc 29467430  T
Q  336 aa 337  Q
    ||    
T  29467429 aa 29467428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 36 - 451
Target Start/End: Original strand, 29423459 - 29423865
Alignment:
Q  36 caggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaag 135  Q
    |||||| ||||||||  |||||||||||| |||||| ||||||||| ||||||| || | | |  ||   |||||||| ||  |||||||||||||||||    
T  29423459 caggaaaaggaacctcattgaaaatctcatgtgttaggttaaacgcaacaattacacgaggtttcaacggatcaagtttctccgtcattatccagtgaag 29423558  T
Q  136 agaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctg 235  Q
    |||||| | ||||||||||||||| |||||||||||||||||||  || |||||  | |||| |  ||||||||||||  |||| ||||| || |||||     
T  29423559 agaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctc 29423658  T
Q  236 acatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgc 335  Q
     ||||||| ||| |||||||  |||||   || |   | ||  ||||| ||||||||||||||||    |||||||||||||||||||| |||| |||||    
T  29423659 gcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgc 29423758  T
Q  336 aataggcaaagttgatgtcgtcaggttcagaacgacggggaggaataggaataggaatagggagaaaagggataatccgatgtttacagatgttagggtt 435  Q
    || || |   || ||||| || |||||||||| |  |         |||  |||||||||||||  |||||||||| ||||||||||||||| |||||||    
T  29423759 aaaagtcggcgtagatgttgttaggttcagaatgttg---------aggggtaggaatagggagggaagggataatgcgatgtttacagatggtagggtt 29423849  T
Q  436 ccagaatgtgatttca 451  Q
    |||||| | |||||||    
T  29423850 ccagaaagcgatttca 29423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 119 - 333
Target Start/End: Complemental strand, 29453169 - 29452955
Alignment:
Q  119 gtcattatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttt 218  Q
    ||||||||||||||||||||||| | |||||||||||||   ||| ||| |||| ||||||| |||||||| || ||||    ||||||||||||  |||    
T  29453169 gtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattt 29453070  T
Q  219 tagagctaaatagtctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaa 318  Q
    | ||||| || ||||| |||||||||||| ||||||||  |||| ||||||     |||||||||||||||||||||||||||  | |||| ||||||||    
T  29453069 tcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaa 29452970  T
Q  319 accgaatccgtgaac 333  Q
    ||| || ||||||||    
T  29452969 accaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 36 - 337
Target Start/End: Complemental strand, 29443269 - 29442965
Alignment:
Q  36 caggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaacaacggtgtaatccatcaagttccttggtcattatccagtgaag 135  Q
    |||||| ||||||||  ||||||||||| ||||||| ||||||||| ||||||  || | | || ||   |||||||| |   ||||||| |||||||||    
T  29443269 caggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaag 29443170  T
Q  136 agaattgtgaacaaaaacccccatggttt---gagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagt 232  Q
     ||||| | ||||||| ||||||| |||    |||||||| ||||||  || |||||  | |||| |  ||||||||||||  ||||  |||| || |||    
T  29443169 ggaattctcaacaaaatcccccattgttcttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagt 29443070  T
Q  233 ctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaa 332  Q
    || |||||||| |||||||||||| |||||    |||   | ||||||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||    
T  29443069 ctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T
Q  333 cgcaa 337  Q
     ||||    
T  29442969 tgcaa 29442965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 673
Target Start/End: Original strand, 29423934 - 29424055
Alignment:
Q  550 gaaaggatgattgagtggaacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattg-ag 648  Q
    ||||||| ||||||||  ||||||||| ||||||||||||||||| |    ||  ||||||| ||||| |||| |||||||||||||||| |||||| ||    
T  29423934 gaaaggaggattgagtttaacggcggtagttaggttagagaaatcgtt---gatttggtagaaatcagagttgtgtcgaaggattaaggaacgattgaag 29424030  T
Q  649 ggatttttgaggtgaaggttgatga 673  Q
    | ||| | ||||||||| |||||||    
T  29424031 gaattatggaggtgaagcttgatga 29424055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 673
Target Start/End: Complemental strand, 29442770 - 29442667
Alignment:
Q  568 aacggcggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgagg-gatttttgaggtgaagg 666  Q
    |||| |||||||||||||||||||||| ||   ||  ||||||| ||||  |||| |||||||||||||||| |||||||||  ||||| |||||||||     
T  29442770 aacgccggtggttaggttagagaaatcttc---gatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagt 29442674  T
Q  667 ttgatga 673  Q
    |||||||    
T  29442673 ttgatga 29442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 29442921 - 29442867
Alignment:
Q  387 taggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 441  Q
    ||||||||||  |||| ||||||||||| ||||||| ||||||||||||||||||    
T  29442921 taggaataggaggaaaggggataatccggtgtttacggatgttagggttccagaa 29442867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 673
Target Start/End: Complemental strand, 29452756 - 29452659
Alignment:
Q  574 ggtggttaggttagagaaatcctcatcgaactggtagagatcagtgttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatg 672  Q
    ||||||||||||||||||||| |    ||  ||||||| | ||| |||| |||||||||||||||| |||||||||| ||||| ||||||||| ||||||    
T  29452756 ggtggttaggttagagaaatcgtt---gatttggtagaaaacagagttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatg 29452660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 29452918 - 29452859
Alignment:
Q  382 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 441  Q
    |||||||| ||||||||||  ||| ||| || ||||||||| ||||||||||||||||||    
T  29452918 aggaatagaaatagggagattaggaatattctgatgtttacggatgttagggttccagaa 29452859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 29467384 - 29467333
Alignment:
Q  390 gaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 441  Q
    |||||||||||  ||| |||||||||||||||| ||||||||| ||||||||    
T  29467384 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaa 29467333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 29463559 - 29463510
Alignment:
Q  382 aggaataggaatagggagaaaagggataatccgatgtttacagatgttag 431  Q
    |||| ||||||||||| || |||||||||||| |||||||| ||||||||    
T  29463559 aggagtaggaatagggggataagggataatccaatgtttacggatgttag 29463510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 148 - 336
Target Start/End: Original strand, 37462801 - 37462989
Alignment:
Q  148 aaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagtctgacatgtgaatca 247  Q
    |||||||||||||||||||  ||| | |||||  || || |  || |||| |||||||||||||||  |||| ||||| || ||||| ||||||| ||||    
T  37462801 aaaaacccccatggtttgacaatattcaagagagtagggaaaactaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatca 37462900  T
Q  248 aaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
     ||  || |  |||| |||| | |  ||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||    
T  37462901 taaaaagggttttgtagatcgagaagccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgca 37462989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 519
Target Start/End: Original strand, 37463039 - 37463166
Alignment:
Q  392 atagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattgg 491  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||| ||||||||| ||   | ||| ||| |  | |||| |||||| ||||||||    
T  37463039 atagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattgg 37463138  T
Q  492 agatgtagaggaggccgttacatgaacc 519  Q
    ||||   |||||||||||||||||||||    
T  37463139 agatagcgaggaggccgttacatgaacc 37463166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 37462674 - 37462745
Alignment:
Q  21 tttgacctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaagttaaacgccacaattaaac 92  Q
    |||||| ||||||| | ||||||||||||| ||| |||||||||| ||||| |||||| || | ||||||||    
T  37462674 tttgacttatttcaaccggaagaggaacctcgttaaaaatctcaaatgttaggttaaatgcgaaaattaaac 37462745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 26575304 - 26575364
Alignment:
Q  276 aagagattctgaggagtttgtaatcgctggttaatggatcaaaaccgaatccgtgaacgca 336  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||||| |||||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgca 26575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 673
Target Start/End: Original strand, 26575666 - 26575720
Alignment:
Q  620 ttgagtcgaaggattaaggatcgattgaggg-atttttgaggtgaaggttgatga 673  Q
    |||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  26575666 ttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatga 26575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 26575411 - 26575472
Alignment:
Q  389 ggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 450  Q
    |||| ||||||||||||||||||||||| ||||| | ||| ||||||||||| || ||||||    
T  26575411 ggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttc 26575472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 26575048 - 26575090
Alignment:
Q  26 cctatttcagcaggaagaggaacctggttgaaaatctcaagtg 68  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||    
T  26575048 cctatttcatcaggaagaggaacctcgttgaaagtctcaagtg 26575090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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