View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4533_low_20 (Length: 338)
Name: NF4533_low_20
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 18871098 - 18870975
Alignment:
| Q |
74 |
aactcacttgaaagtcagattt-attagacgacaaacgaatgagatatacttcttaattatagtacaaaatgacatattctgcaatccactaaaatttta |
172 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
18871098 |
aactcacttgaaaatcagattttattagacgacaaacgaatgagatatacttgttaattatagtccaaaatgacctattctgcaatctactaaaattttc |
18870999 |
T |
|
| Q |
173 |
aagttgtagagatttatcataact |
196 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
18870998 |
aatttgtagagatttattataact |
18870975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 19395920 - 19396037
Alignment:
| Q |
210 |
caccataataactctagtcttttgagtataatttttctcgtacaaaattaaataaaatccattcaaacatttcacgttgcat----aaacaggcatagag |
305 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||| |||||||||||| | |
|
|
| T |
19395920 |
caccataacaactctagtcttttgagtataatttttcatttacaaaattaaataaaattcattcaaacctttcactttgcataaacaaacaggcatagcg |
19396019 |
T |
|
| Q |
306 |
gagtgctctaactaggag |
323 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19396020 |
gagtgctctaactaggag |
19396037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 18167366 - 18167438
Alignment:
| Q |
214 |
ataataactctagtcttttgagtataatttttctcgtacaaaattaaataaaatccattcaaacatttcacgt |
286 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
18167366 |
ataacaactctagtcttttgagtataatttttcatgtacaaaattaaataaaattcattcaaacctttcacgt |
18167438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 19383519 - 19383582
Alignment:
| Q |
125 |
cttaattatagtacaaaatgacatattctgcaatccactaaaattttaaagttgtagagattta |
188 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
19383519 |
cttaattatagtacaaaatgacaaattctgcaatctactaaaattttcaagttgtagagattta |
19383582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University