View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_22 (Length: 330)

Name: NF4533_low_22
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_22
NF4533_low_22
[»] chr2 (10 HSPs)
chr2 (22-320)||(10973453-10973756)
chr2 (23-240)||(2973408-2973626)
chr2 (23-222)||(14230956-14231156)
chr2 (23-243)||(17826680-17826905)
chr2 (121-199)||(511241-511319)
chr2 (84-225)||(11553321-11553463)
chr2 (84-227)||(11818445-11818589)
chr2 (90-227)||(16206539-16206677)
chr2 (138-226)||(23379917-23380005)
chr2 (188-244)||(20661292-20661348)
[»] chr8 (8 HSPs)
chr8 (23-241)||(10601027-10601246)
chr8 (23-240)||(20526159-20526379)
chr8 (155-240)||(23558718-23558803)
chr8 (90-227)||(14505721-14505859)
chr8 (90-227)||(37590039-37590177)
chr8 (164-227)||(19299023-19299086)
chr8 (90-227)||(15990412-15990550)
chr8 (97-244)||(34723838-34723986)
[»] chr1 (10 HSPs)
chr1 (23-241)||(16678732-16678952)
chr1 (23-241)||(47726191-47726415)
chr1 (23-241)||(47747497-47747721)
chr1 (51-222)||(34696110-34696282)
chr1 (88-227)||(41117187-41117327)
chr1 (90-240)||(2002526-2002677)
chr1 (122-222)||(30981259-30981359)
chr1 (90-245)||(21701457-21701613)
chr1 (90-227)||(30033582-30033720)
chr1 (84-227)||(24065207-24065351)
[»] chr6 (7 HSPs)
chr6 (23-245)||(30140922-30141145)
chr6 (84-226)||(16416595-16416738)
chr6 (84-235)||(23508844-23508996)
chr6 (164-227)||(34355746-34355809)
chr6 (177-235)||(16890298-16890356)
chr6 (185-222)||(17391997-17392034)
chr6 (143-227)||(187089-187173)
[»] chr4 (15 HSPs)
chr4 (23-245)||(54027686-54027909)
chr4 (23-241)||(27066334-27066553)
chr4 (23-244)||(12355157-12355379)
chr4 (23-241)||(27087435-27087654)
chr4 (23-191)||(27066578-27066747)
chr4 (23-191)||(27066772-27066941)
chr4 (141-226)||(4462624-4462709)
chr4 (90-236)||(28860789-28860936)
chr4 (90-227)||(55227612-55227750)
chr4 (83-227)||(13686001-13686146)
chr4 (164-227)||(54823744-54823807)
chr4 (90-227)||(30859363-30859501)
chr4 (160-199)||(49745960-49745999)
chr4 (161-227)||(20527781-20527847)
chr4 (164-226)||(30190950-30191012)
[»] chr5 (11 HSPs)
chr5 (23-245)||(29754938-29755160)
chr5 (58-241)||(26683445-26683629)
chr5 (23-226)||(5335212-5335416)
chr5 (45-215)||(22864512-22864683)
chr5 (84-227)||(36044911-36045055)
chr5 (80-214)||(40299892-40300027)
chr5 (90-227)||(22292379-22292517)
chr5 (152-244)||(23976592-23976684)
chr5 (88-227)||(27493251-27493391)
chr5 (177-236)||(13948782-13948841)
chr5 (177-244)||(18759803-18759870)
[»] scaffold1964 (1 HSPs)
scaffold1964 (23-179)||(1045-1202)
[»] scaffold0643 (1 HSPs)
scaffold0643 (36-242)||(994-1201)
[»] chr3 (12 HSPs)
chr3 (23-238)||(12370776-12370992)
chr3 (152-215)||(12749485-12749548)
chr3 (90-240)||(18765582-18765733)
chr3 (90-227)||(6006037-6006175)
chr3 (164-244)||(31935315-31935395)
chr3 (122-222)||(45680111-45680211)
chr3 (90-227)||(17790152-17790290)
chr3 (90-227)||(19098594-19098732)
chr3 (165-227)||(36144802-36144864)
chr3 (149-227)||(35906934-35907012)
chr3 (164-236)||(31973573-31973645)
chr3 (84-227)||(49499404-49499548)
[»] scaffold0650 (1 HSPs)
scaffold0650 (84-244)||(288-449)
[»] chr7 (6 HSPs)
chr7 (84-227)||(48770106-48770250)
chr7 (90-227)||(32480215-32480353)
chr7 (88-227)||(15633227-15633367)
chr7 (164-226)||(30502581-30502643)
chr7 (164-245)||(3896540-3896621)
chr7 (143-225)||(27810590-27810672)
[»] scaffold0019 (1 HSPs)
scaffold0019 (80-222)||(73345-73488)
[»] scaffold0303 (1 HSPs)
scaffold0303 (90-236)||(14197-14344)
[»] scaffold0040 (1 HSPs)
scaffold0040 (164-227)||(62490-62553)
[»] scaffold0789 (1 HSPs)
scaffold0789 (164-244)||(4201-4281)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 320
Target Start/End: Complemental strand, 10973756 - 10973453
Alignment:
Q  22 aggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagc 120  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||    
T  10973756 aggaagacataacagaatttggtaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagc 10973657  T
Q  121 taatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttc--atatacccaattgtattgaaactttgattacta 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  10973656 taatgtggtggctcacactctcgtaggggaagccacatttctcgtttgtcccacaatttattttcatatatatccaattgtattgaaactttgattacta 10973557  T
Q  219 atgaaatgcattaagcacttttccctc--nnnnnnnnnnnnnntagaggctcgtgaatgtatgtaacgctaaaaaatctcagactctacatgcattgatg 316  Q
    |||||||||||||| ||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10973556 atgaaatgcattaaacacttttccctcaaaaaaaaaaaaaaaatagaggctcgtgaatgtatgtaacgctaaaaaatctcagactctacatgcattgatg 10973457  T
Q  317 atgt 320  Q
    ||||    
T  10973456 atgt 10973453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 2973626 - 2973408
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| |||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||    
T  2973626 ggaagacataactgaatttggcaacatcatcacggcttcctagtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggccacaagct 2973527  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    ||||| ||||| |||||||||||| |||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  2973526 aatgttgtggcccacactctcgcaagggaagccgcatttctcgctagtcccactatgtattttcgtatacccaattgtattgaaactttgattactaatg 2973427  T
Q  222 aaatgcattaagcactttt 240  Q
    ||||||  |||||||||||    
T  2973426 aaatgctataagcactttt 2973408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 14230956 - 14231156
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| |||||||||||  | |||||||||||||| | || |||||||||||||||| | |||||||||||| ||| | |||||    
T  14230956 ggaagacataaccgaatttggaaacatcatcacagcctcccggtctttgcttttgtccaagtttaccaactctagagtggagtttgttaggcgacaagct 14231055  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||| |||||    
T  14231056 aatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctattttcatatacccaattgtattgaaactttgattattaatg 14231155  T
Q  222 a 222  Q
    |    
T  14231156 a 14231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 17826680 - 17826905
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcac-ga-cttcccggtctttg--ctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ata 117  Q
    |||||| ||||| |||||||||||||||||||| || ||||| |||||||   |||| || |||||||| |||||||  ||||||||||| | ||| | |    
T  17826680 ggaagatataaccgaatttggtaacatcatcacagagcttcctggtctttttactcttgtccaagtttagcaactctacggtggagtttgctaggcgaca 17826779  T
Q  118 agctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattact 217  Q
    || ||||||||||||||||||| | | ||| ||||||| ||| |||||||||||| | ||||||| |||||||| |||||||||||||||||||||||      
T  17826780 agataatgtggtggctcacactgttgtaggagaagccatattcctcgctagtcccgctatttattatcatatactcaattgtattgaaactttgattatc 17826879  T
Q  218 aatgaaatgcattaagcacttttccc 243  Q
    |||||||| |  ||||||| ||||||    
T  17826880 aatgaaatactataagcacctttccc 17826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 511319 - 511241
Alignment:
Q  121 taatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 199  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  511319 taatgtggtggctcacactcttgcaagagaagccacatttctcgctagtcccgctatttattttcatatacccaattgt 511241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 11553321 - 11553463
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||||| |||||||||||  ||||| | ||||||||| ||| | |||   ||||||||| ||||||||||| || ||||||||||| |||||||    
T  11553321 tttaccaactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttatt 11553420  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaat 225  Q
    ||||||||||| | | |||||||||| | |||| |||||||||    
T  11553421 ttcatatacccgaatatattgaaactcttattattaatgaaat 11553463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 11818589 - 11818445
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||||| |||||||||||||| ||| | |||| || | ||| |||||   ||| ||||| |||||||| || || |||||||||   |||||||    
T  11818589 tttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttatt 11818490  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||| |||||||||| ||||||| || | |||| |||||||||||    
T  11818489 ttcagatacccaattatattgaacctcttattattaatgaaatgc 11818445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 16206539 - 16206677
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  16206539 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 16206638  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  16206639 tacccaattgtattgaaactcttattataaatgaaatgc 16206677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 23379917 - 23380005
Alignment:
Q  138 ctctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 226  Q
    |||||||| | |||| |||||| || |||||| || |  |||||||| | ||||||||||||||||||||| | |||| ||||||||||    
T  23379917 ctctcgcaagagaagtcacattactagctagttccgctgtttattttaaaatacccaattgtattgaaactattattattaatgaaatg 23380005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 20661292 - 20661348
Alignment:
Q  188 atacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
    |||||||||||||||||| |||||||||  ||||||||||  ||||||  |||||||    
T  20661292 atacccaattgtattgaatctttgattatcaatgaaatgctataagcaagtttccct 20661348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 10601027 - 10601246
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||    
T  10601027 ggaagacataactgaatttggcaacatcatcacgactttccggtctttgctctcgtccaagtttaccaactctcaggtggagtttgttcggcgacaagct 10601126  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||    
T  10601127 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccactatttatcttcatatacccaattatattgaaactttgattactaatg 10601226  T
Q  222 aaatgcattaagcacttttc 241  Q
    ||||||  ||||||||||||    
T  10601227 aaatgctataagcacttttc 10601246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 20526379 - 20526159
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| ||| | |||||||| ||||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |    
T  20526379 ggaagacataactgaagtcggtaacattatcattgcttcccggtttttgctctcgttcaaatttaccaactctcgggtggagtttgttcggcgacaagtt 20526280  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgat--tactaa 219  Q
    |||||||||||||| |||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||  ||||||    
T  20526279 aatgtggtggctcatactctcgcaggggaggccacatttctcactagtcgcactatttattttcatatacccaattgtattgaaactttaattatactaa 20526180  T
Q  220 tgaaatgcattaagcactttt 240  Q
    ||||||||  ||| |||||||    
T  20526179 tgaaatgctataaacactttt 20526159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 23558718 - 23558803
Alignment:
Q  155 acatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcactttt 240  Q
    |||||||| ||||||||||| ||||||||||| |||||| | |||||||| |||||||||  ||||||||||   |||||||||||    
T  23558718 acatttctagctagtcccactatttattttcacataccccaatgtattgagactttgattgttaatgaaatgttataagcactttt 23558803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 14505721 - 14505859
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  14505721 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 14505820  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  14505821 tacccaattgtattgaaactcttattataaatgaaatgc 14505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 37590177 - 37590039
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | |||||| || |  |||||||| |||    
T  37590177 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaata 37590078  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | |||| |||||||||||    
T  37590077 tacccaattgtattgaaactcttattattaatgaaatgc 37590039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 19299086 - 19299023
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||| |  |||||||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  19299086 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 19299023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 15990550 - 15990412
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | ||||  | ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  15990550 aactctagggtggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 15990451  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  15990450 tacccaattgtattgaaactcttattataaatgaaatgc 15990412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 34723986 - 34723838
Alignment:
Q  97 gggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaa 195  Q
    |||||||||||||| ||| | |||| || ||||| ||||| ||||| ||| | |||||||| | | | ||||||| | |  |||||| | ||||||||||    
T  34723986 gggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatatacccaa 34723887  T
Q  196 ttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
    |||||||||| || | || | |||||||||||  ||||||  |||||||    
T  34723886 ttgtattgaatctattatgattaatgaaatgctctaagcatctttccct 34723838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 16678952 - 16678732
Alignment:
Q  23 ggaagacataa-cagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagc 120  Q
    ||||||||||| | |||||||| |||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| | ||      
T  16678952 ggaagacataaactgaatttggcaacatcatcacggcttcccggtctttgctctcgtcaaagtttaccaactctcgcgtggagtttgttcggcgacaaat 16678853  T
Q  121 taatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  16678852 taatgtggtggctcacactctcgcaggggaagccacatttctcgcttgtcccactatttattttcatatacccaattggattgaaactttgattactaat 16678753  T
Q  221 gaaatgcattaagcacttttc 241  Q
    |||||||  ||||||||||||    
T  16678752 gaaatgctataagcacttttc 16678732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 47726191 - 47726415
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| |||||||||||   |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| | |||||    
T  47726191 ggaagacataactgaatttggcaacatcatcacatattcccggtctttgctctcgtccaagtttaccaactctcgagtggagtttgtttggcgacaagct 47726290  T
Q  122 a-----atgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattac 216  Q
    |     |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47726291 attataatgtggtgtctcacactctcgcagggaaagccacatttctcgctagtcccactatttattttcatatacccaattgtattgaaactttgattac 47726390  T
Q  217 taatgaaatgcattaagcacttttc 241  Q
    |||||||||||  ||| ||||||||    
T  47726391 taatgaaatgctataaacacttttc 47726415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 47747497 - 47747721
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| |||||||||||   |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| | |||||    
T  47747497 ggaagacataactgaatttggcaacatcatcacatattcccggtctttgctctcgtccaagtttaccaactctcgagtggagtttgtttggcgacaagct 47747596  T
Q  122 a-----atgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattac 216  Q
    |     |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47747597 attataatgtggtgtctcacactctcgcagggaaagccacatttctcgctagtcccactatttattttcatatacccaattgtattgaaactttgattac 47747696  T
Q  217 taatgaaatgcattaagcacttttc 241  Q
    |||||||||||  ||| ||||||||    
T  47747697 taatgaaatgctataaacacttttc 47747721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 34696282 - 34696110
Alignment:
Q  51 atcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagggg 149  Q
    |||||| ||||||||  | | ||||| | |||||| | |||||||||||||||||||| | ||  | |||  |||||||| ||||| ||||||| ||| |    
T  34696282 atcacggcttcccggattcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggag 34696183  T
Q  150 aagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatga 222  Q
    |  |||| ||||| ||||||| |    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34696182 agaccacgtttctagctagtctcgttgtttattttcatataccccattgtattgaaactttgattattaatga 34696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 41117187 - 41117327
Alignment:
Q  88 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 186  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||| |||||  |||| ||| | |||||||| || || |||||||||||  |||||||| |    
T  41117187 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttga 41117286  T
Q  187 tatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
     ||||||||||||||| ||||| | ||||  ||||||||||    
T  41117287 gatacccaattgtattcaaactattattatcaatgaaatgc 41117327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 2002677 - 2002526
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    ||||||||||||||||||||  ||  | |||| |||||||| ||||| ||||||||| | ||  |||||||||||||||||||    | |||||||  ||    
T  2002677 aactctcgggtggagtttgtcaggagacaagcaaatgtggttgctcatactctcgcatgagagaccacatttctcgctagtccagttacttattttatta 2002578  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgcattaagcactttt 240  Q
    |||| | |||||||||||||||||||| |||||| ||||  ||| |||||||    
T  2002577 tacctagttgtattgaaactttgattattaatgagatgctataaacactttt 2002526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 30981259 - 30981359
Alignment:
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||| ||||| |||||||||||  | | |||||||||||||||| ||   | |||||||  |||||||| ||||||||||||||| |||| |||||    
T  30981259 aatgtggttgctcatactctcgcaggaaaggtcacatttctcgctagttccgttacttattttgttatacccagttgtattgaaactttaattattaatg 30981358  T
Q  222 a 222  Q
    |    
T  30981359 a 30981359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 21701613 - 21701457
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| |||||| || ||||| |||||  ||||  || | || ||||| | | | ||||||||| |  |||||| | |||    
T  21701613 aactctagggtggagtttgttaggcgataagccaacgtggttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttattatgata 21701514  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 245  Q
    ||| |||||||||||||||| | || | |||||||||||  ||||||| ||||||||    
T  21701513 tactcaattgtattgaaactcttatgattaatgaaatgctataagcacgtttccctc 21701457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 30033582 - 30033720
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| |  ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  30033582 aactctagggtggagtttgttaggcgacaagccagcgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 30033681  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||| |||||||||| | ||||  ||||||||||    
T  30033682 tacccaattatattgaaactcttattataaatgaaatgc 30033720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 24065207 - 24065351
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||| | |||||||||||||| ||| | |||| || | ||| |||||   ||| ||||| |||||||| || || |||||||||    ||||||    
T  24065207 tttaccaactttagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttatt 24065306  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||| |||||| |||||||||||  | | |||| |||||||||||    
T  24065307 ttcacatacccgattgtattgaacttcttattattaatgaaatgc 24065351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 30141145 - 30140922
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||| ||| |||||||||||  |||||||||||||||| | || |||||||||||||||| |||||||||||||| ||| | |||||    
T  30141145 ggaagacataacggaatgtggaaacatcatcacagcttcccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagct 30141046  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||    
T  30141045 aatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatg 30140946  T
Q  222 aaatgcattaagcacttttccctc 245  Q
    ||||||  ||||||||||||||||    
T  30140945 aaatgctataagcacttttccctc 30140922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 16416595 - 16416738
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||||| ||||| |||||||| ||| | |||  |||| ||| ||||  | ||| ||||| || | |||||| || ||||||| ||  |||||||    
T  16416595 tttaccaactctagggtgtagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcattatttatt 16416694  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatg 226  Q
    ||||||||||||||||||||||| || | |||| ||||||||||    
T  16416695 ttcatatacccaattgtattgaacctcttattattaatgaaatg 16416738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 23508996 - 23508844
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||| ||| |||||||||||||| ||| | |||| |||| ||| |||||   ||| ||||| ||||||||||| |  |||||||||    |||| |    
T  23508996 tttaccaattctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtcccgttgtttaat 23508897  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagca 235  Q
    |||| |||||  ||||||||||| || | |||| |||||||||||| ||||||    
T  23508896 ttcacatacctgattgtattgaacctcttattattaatgaaatgcaataagca 23508844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 34355809 - 34355746
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||| |  |||||||| ||||||||||||||||||||||| | ||||  ||||||||||    
T  34355809 gctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgc 34355746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 16890298 - 16890356
Alignment:
Q  177 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagca 235  Q
    |||||||| |||||||||||||| |||||||| |  ||| |||||||||||| ||||||    
T  16890298 tttattttgatatacccaattgttttgaaactcttgttattaatgaaatgcaataagca 16890356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 17392034 - 17391997
Alignment:
Q  185 catatacccaattgtattgaaactttgattactaatga 222  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  17392034 catataccctattgtattgaaactttgattattaatga 17391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 187089 - 187173
Alignment:
Q  143 gcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||| |||||||||||||| |||||||     ||||||||| | ||| |||||||||||||| || | |||| |||||||||||    
T  187089 gcaggagaagccacatttctagctagtcttgttatttattttaacatatccaattgtattgaatctcttattattaatgaaatgc 187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 54027909 - 54027686
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||||| |||| || |||||||||||||||| ||||||||||| || ||| | |||||    
T  54027909 ggaagatataaccgaatttggtaacatcatcacaacttcccggtctttactcttgtccaagtttaccaactctagggtggagttttttaggcgacaagct 54027810  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||| |||||    
T  54027809 aatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttattttcatatacccaattatattgaaactttgattattaatg 54027710  T
Q  222 aaatgcattaagcacttttccctc 245  Q
    |||||   ||||||| ||||||||    
T  54027709 aaatgatataagcacatttccctc 54027686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 27066553 - 27066334
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||  |||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||||| |||||||||||||| ||| | |||||    
T  27066553 ggaagacataatggaatttggaaacatcatcacaacttcccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttgggcgacaagct 27066454  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||| |||||    
T  27066453 aatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatg 27066354  T
Q  222 aaatgcattaagcacttttc 241  Q
    ||||||  ||||||| ||||    
T  27066353 aaatgctataagcacatttc 27066334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 12355157 - 12355379
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| || ||||||||  |||||||||| ||||| | || |||||||||||||||| |||||||||||||| ||| | ||| |    
T  12355157 ggaagacataacggaatttggaaatatcatcacagcttcccggtccttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaggt 12355256  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    ||||||||||||||||||||  ||  |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  12355257 aatgtggtggctcacactcttccaaaggaaaccacatttctcgctagtcccactatctattttcatatacccaattgtattgaaactttgattattaatg 12355356  T
Q  222 aaatgcattaagcacttttccct 244  Q
    |||||| |||||||| |||||||    
T  12355357 aaatgctttaagcacctttccct 12355379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 27087654 - 27087435
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||  |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| |||||||||||||| ||| | |||||    
T  27087654 ggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagct 27087555  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||| |||||    
T  27087554 aatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatg 27087455  T
Q  222 aaatgcattaagcacttttc 241  Q
    ||||||  ||||||| ||||    
T  27087454 aaatgctataagcacatttc 27087435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 27066747 - 27066578
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||  |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| |||||||||||||| ||| | |||||    
T  27066747 ggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagct 27066648  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatac 191  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || |||||||||||||    
T  27066647 aatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatac 27066578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 27066941 - 27066772
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||  |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| |||||||||||||| ||| | |||||    
T  27066941 ggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagct 27066842  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatac 191  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || |||||||||||||    
T  27066841 aatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatac 27066772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 4462624 - 4462709
Alignment:
Q  141 tcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 226  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||||| |  | |||||||||||||| |||| |||| |||||    
T  4462624 tcgcaggagaagccacattactaactagtcccacaatttattttcatatatctgaatgtattgaaacttttattattaataaaatg 4462709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 28860789 - 28860936
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||||||||||||||  | || ||||||||  | |||||| ||  | |||||| |  ||    
T  28860789 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgcta 28860888  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgcattaagcac 236  Q
    ||| ||||||||||||| |||||||||  ||||| ||||  |||||||    
T  28860889 tactcaattgtattgaatctttgattataaatgatatgctataagcac 28860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 55227612 - 55227750
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | || | || ||||| |||||  |||| ||| |||| ||||||| | | ||||||||| |  |||||||| |||    
T  55227612 aactctagggtggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaata 55227711  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  55227712 tacccaattgtattgaaactcttattataaatgaaatgc 55227750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 13686001 - 13686146
Alignment:
Q  83 gtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttat 181  Q
    ||||||||||||| |||||||||||||| ||| | |||| || | ||| |||||   ||| ||| | |||| ||| || || ||||||||||   |||||    
T  13686001 gtttaccaactctagggtggagtttgttaggcgacaagcaaacggggttgctcatgttcttgcaagagaagtcacgttactagctagtcccattgtttat 13686100  T
Q  182 tttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||| ||||||||||| || | |||| |||||||||||    
T  13686101 tttcatatacccgattgtattgaatctcttattattaatgaaatgc 13686146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 54823744 - 54823807
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||| |  |||||||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  54823744 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 54823807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 30859363 - 30859501
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | |  |||||||| |  |||||||| |||    
T  30859363 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaata 30859462  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  30859463 tacccaattgtattgaaactcttattataaatgaaatgc 30859501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 49745999 - 49745960
Alignment:
Q  160 tctcgctagtcccacaatttattttcatatacccaattgt 199  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  49745999 tctcgcttgtcccactatttattttcatatacccaattgt 49745960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 20527847 - 20527781
Alignment:
Q  161 ctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||| | ||||||| | |||||||| |||||||||||||| | ||||  ||||||||||    
T  20527847 ctcgctagtcccgccatttattatgatatacccgattgtattgaaactcttattatcaatgaaatgc 20527781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 30191012 - 30190950
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 226  Q
    ||||||||| |  |||||||| ||||| ||||||||||||||||| | |||| ||||||||||    
T  30191012 gctagtcccgccgtttattttgatatatccaattgtattgaaactcttattattaatgaaatg 30190950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 29755160 - 29754938
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| ||||||||||   |||||||||| ||||| | || |||||||||||||||| |||||||||||||| ||| | |||||    
T  29755160 ggaagacataacggaatttggaaacatcatcatagcttcccggtccttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagct 29755061  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||||||||||||||||| |||  | ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||    
T  29755060 aatgtggtggctcacactcttgcaaag-aagccacatttctcgctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatg 29754962  T
Q  222 aaatgcattaagcacttttccctc 245  Q
    ||||||  ||||||| ||||||||    
T  29754961 aaatgctataagcacctttccctc 29754938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 26683445 - 26683629
Alignment:
Q  58 cttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccac 156  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||||||||| || | ||| ||||||||||||||| ||||| |||||||| |||||    
T  26683445 cttccccgtctttgctctcgtccaagttttccaactctcgggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcaggggaggccac 26683544  T
Q  157 atttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttc 241  Q
    |||||| ||||||||| | |||||||||||||||| || |||||||||||||| ||||||||||||||| |  ||||||||||||    
T  26683545 atttcttgctagtcccgctatttattttcatatactcagttgtattgaaacttcgattactaatgaaattctataagcacttttc 26683629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 5335416 - 5335212
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggcat-aagct 121  Q
    |||||||||||| |||||||| |||||||||||  |||||| ||||||| | | || |||||||||||||||| |||||||||||||| ||||  |||||    
T  5335416 ggaagacataactgaatttggaaacatcatcacagcttcccagtctttgtttttgtccaagtttaccaactctagggtggagtttgttaggcaacaagct 5335317  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||| ||||||||||||| |||  ||||||||||||||||||||||| | | || |||||||||| | |||||| ||||||||||||||||| |||||    
T  5335316 aatgtgttggctcacactcttgcaaaggaagccacatttctcgctagtctcgctatctattttcataaatccaattatattgaaactttgattattaatg 5335217  T
Q  222 aaatg 226  Q
    |||||    
T  5335216 aaatg 5335212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 22864683 - 22864512
Alignment:
Q  45 aacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggcat-aagctaatgtggtggctcacactctcg 143  Q
    ||||| |||||  ||||| | |||||||| |||| |||||||||||||||||| ||| |||||||| ||||  || ||||| || ||||||| | |||||    
T  22864683 aacattatcactgcttcctgatctttgctttcgtccaagtttaccaactctcgagtgaagtttgttaggcaacaaactaatatgttggctcatattctcg 22864584  T
Q  144 caggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgatta 215  Q
      |  || |||| |||| ||||||||||| | |||| |||| ||||||| |||||||||||||| |||||||    
T  22864583 tcgaagaggccatatttatcgctagtcccgctatttgtttttatatacctaattgtattgaaacgttgatta 22864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 36044911 - 36045055
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||||| | ||| |||||||| ||| | |||| |||| ||| ||||| | ||| | ||| ||||||||||| || ||||||||||| |||||||    
T  36044911 tttaccaactctagagtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcccaccatttatt 36045010  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||| ||| | ||||||||| || | |||| |||||||||||    
T  36045011 ttcatatgcccgaatgtattgaatctcttattattaatgaaatgc 36045055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 40299892 - 40300027
Alignment:
Q  80 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 178  Q
    |||||| | |||||||||||||||||||||| ||| | |||| || ||||| ||||| ||||||| ||  || |||||||||||||||||| ||    ||    
T  40299892 caagttcaacaactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttgtt 40299991  T
Q  179 tattttcatatacccaattgtattgaaactttgatt 214  Q
    ||||||||||||||   ||||||||| |||||||||    
T  40299992 tattttcatataccactttgtattgagactttgatt 40300027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 22292379 - 22292517
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  22292379 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 22292478  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  22292479 tacccaattgtattgaaactcttattataaatgaaatgc 22292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 23976592 - 23976684
Alignment:
Q  152 gccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
    ||||||||||||| |||||||   | |||||||  |||||| |  ||||||||||||||||||| |||||| ||||  |||||||||||||||    
T  23976592 gccacatttctcgttagtcccgttacttattttattatacctagatgtattgaaactttgattattaatgatatgctataagcacttttccct 23976684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 27493251 - 27493391
Alignment:
Q  88 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 186  Q
    ||||||||| |||||||||||||  || | |||| ||||| |  ||||| ||||||||||  || ||||| ||  | ||||||||| || |||||| |      
T  27493251 ccaactctcaggtggagtttgttaagcgacaagccaatgtagcagctcatactctcgcagaagaggccacgttattagctagtcccgcagtttattatgt 27493350  T
Q  187 tatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||||||||||||| |||||||||  ||||||||||    
T  27493351 tatacccaattgtattgaatctttgattataaatgaaatgc 27493391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 13948841 - 13948782
Alignment:
Q  177 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcac 236  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| ||||  |||||||    
T  13948841 tttattttcatataccctattgtattgaaactttgattattattgatatgctataagcac 13948782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 18759803 - 18759870
Alignment:
Q  177 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
    |||||||| |||||||||||| |||||||||||| |||| |||||||||||  ||||||  |||||||    
T  18759803 tttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagcatgtttccct 18759870  T

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Target: scaffold1964 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 1045 - 1202
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| |||||||| ||||| |||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||    
T  1045 ggaagacataactgaatttggcaacattatcacggctttccagtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagct 1144  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaattt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1145 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagttccactattt 1202  T

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Target: scaffold0643 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 994 - 1201
Alignment:
Q  36 gaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctc 134  Q
    |||||||| |||||||||||  | ||||||||| |||| | || |||||||||||||||| |||||||||||||| ||| | || |||||||||||||||    
T  994 gaatttggaaacatcatcacagcctcccggtctatgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaactaatgtggtggctc 1093  T
Q  135 acactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagc 234  Q
    ||| |||  || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||| |||||||||||  |||||    
T  1094 acaatcttacaagggaagccacatttctcgctagtcccgctatttattttcatatacccaattgtattgaatgtttgattattaatgaaatgctataagc 1193  T
Q  235 acttttcc 242  Q
    || |||||    
T  1194 acctttcc 1201  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 12370992 - 12370776
Alignment:
Q  23 ggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagct 121  Q
    |||||||||||| ||| | |||||||| |||||   |||||| |||||| | | || ||||||| ||||||||| |||||||||| |||||| | |||||    
T  12370992 ggaagacataactgaagtcggtaacattatcactgtttcccgatctttgtttttgtccaagtttgccaactctctggtggagtttattcggcgacaagct 12370893  T
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    ||||||||| |||| ||||| |||||||| ||||||||||| ||||||||  | ||||||||||||||| |||||||||||||||||||||||||||||     
T  12370892 aatgtggtgactcatactcttgcaggggaggccacatttcttgctagtcctgctatttattttcatatatccaattgtattgaaactttgattactaata 12370793  T
Q  222 aaatgcattaagcactt 238  Q
    ||||||  |||||||||    
T  12370792 aaatgctataagcactt 12370776  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 12749485 - 12749548
Alignment:
Q  152 gccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgatta 215  Q
    |||||||||||||||||||||   |||||||||||| |||| ||||||||||||||||||||||    
T  12749485 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtattgaaactttgatta 12749548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 18765733 - 18765582
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    ||||||||||||||||||||| ||| | |||| ||| |||| ||||| ||||||||  | || ||||||||  | |||||| ||  |||||||| |  ||    
T  18765733 aactctcgggtggagtttgttaggcgacaagccaatttggtagctcatactctcgctagagaggccacattaatagctagtgccgtaatttattatgtta 18765634  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgcattaagcactttt 240  Q
    ||||||||||||||||| |||  ||||  ||||||||||  |||||||||||    
T  18765633 tacccaattgtattgaatcttctattataaatgaaatgctataagcactttt 18765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 6006175 - 6006037
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || |||||  ||||  |||| ||| |||||||||| | | | ||||||||| |  |||||||| |||    
T  6006175 aactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctagtcccgccgtttattttaata 6006076  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  6006075 tacccaattgtattgaaactcttattataaatgaaatgc 6006037  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 31935315 - 31935395
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
    ||||||||| |  |||||| | |||||||||||||||||||| ||||||| | |||||||||||  ||||||| |||||||    
T  31935315 gctagtcccgccgtttattatgatatacccaattgtattgaatctttgatgattaatgaaatgctctaagcacgtttccct 31935395  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 45680211 - 45680111
Alignment:
Q  122 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 221  Q
    |||||| | ||||| ||||| ||| | || ||||||||| | |||||||||    ||||||||| |||||||||||||||||| |||||||||| |||||    
T  45680211 aatgtgattgctcatactcttgcaagagaggccacattttttgctagtccctttgtttattttcgtatacccaattgtattgagactttgattattaatg 45680112  T
Q  222 a 222  Q
    |    
T  45680111 a 45680111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 17790152 - 17790290
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||| |||| ||| |||| ||||| | | | |||||||   |  |||||||| |||    
T  17790152 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaata 17790251  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  17790252 tacccaattgtattgaaactcttattataaatgaaatgc 17790290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 19098594 - 19098732
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||| |||| ||| |||| ||||| | | | |||||||   |  |||||||| |||    
T  19098594 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaata 19098693  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  19098694 tacccaattgtattgaaactcttattataaatgaaatgc 19098732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 36144802 - 36144864
Alignment:
Q  165 ctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||||| |||||||||||||||||| ||||||||||| || |  ||| |||||||||||    
T  36144802 ctagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgc 36144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 35907012 - 35906934
Alignment:
Q  149 gaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    |||||||| || || ||||||||| |  |||||||| | ||||||||||||||||||||| | ||||  ||||||||||    
T  35907012 gaagccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgc 35906934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 31973573 - 31973645
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcac 236  Q
    ||||||||| |  |||||| | |||||||||||||||||||| |||| || | |||||||||||  |||||||    
T  31973573 gctagtcccgccgtttattatgatatacccaattgtattgaatctttaatgattaatgaaatgctctaagcac 31973645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 49499404 - 49499548
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||||| |||||||||||| | ||| | |||| |||||||  |||||   ||| ||| | |||||||| ||||| ||||||| |   |||||||    
T  49499404 tttaccaactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagctagtctcgttatttatt 49499503  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    || | ||| || ||||||||||| || | |||| |||||||||||    
T  49499504 ttaacatatccgattgtattgaatctcttattattaatgaaatgc 49499548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 449 - 288
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||| ||| ||||| | ||||||   ||||||||| |||||| || | |||||||    
T  449 tttaccaactctcgggtagagtttgctcgacgataagctaatgtggtggttcatactcttgaaggggagatcacatttcttgctagttccgctatttatt 350  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
    ||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||    
T  349 ttcatatacccaattgtattgaagctttgattactaatgaaatattataagcacttttccct 288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 48770106 - 48770250
Alignment:
Q  84 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 182  Q
    |||||||||||| ||||||||||| |||||| | ||||||||| ||| |||||   ||||||||| ||||||||||| |  ||||||||||| |||||||    
T  48770106 tttaccaactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttatt 48770205  T
Q  183 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||||| | |||||||||||| | |||| |||||||||||    
T  48770206 ttcatatacccgaatgtattgaaactcttattattaatgaaatgc 48770250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 32480215 - 32480353
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    |||||| |||||||||||||| ||| | |||| || ||||| ||||| ||||| ||| |||| ||||| | | | ||||||||| || |||||||| |||    
T  32480215 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaata 32480314  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||| |||||||||||||||| | |||| |||||||||||    
T  32480315 tactcaattgtattgaaactcttattattaatgaaatgc 32480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 15633227 - 15633367
Alignment:
Q  88 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 186  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||| ||||| ||||| ||| | |||||||| || || |||||||||    |||| ||| |    
T  15633227 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttga 15633326  T
Q  187 tatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
     ||||||||||||||||||||| | ||||  ||||||||||    
T  15633327 aatacccaattgtattgaaactattattatcaatgaaatgc 15633367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 30502581 - 30502643
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 226  Q
    ||||||||| || |||||||| |||||||| |||||||||||||| | |||| ||||||||||    
T  30502581 gctagtcccgcagtttattttgatatacccgattgtattgaaactcttattattaatgaaatg 30502643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 3896540 - 3896621
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 245  Q
    ||||||||| |  |||||||| |||||||| |||||||||||||| | |||| |||||||||||  ||||||  ||||||||    
T  3896540 gctagtcccgccgtttattttgatatacccgattgtattgaaactcttattattaatgaaatgctataagcatgtttccctc 3896621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 27810590 - 27810672
Alignment:
Q  143 gcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaat 225  Q
    |||||||| |||||||| || ||||||| | |  |||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  27810590 gcaggggaggccacattccttgctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaat 27810672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 73488 - 73345
Alignment:
Q  80 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 178  Q
    |||||| | |||||||||||||||||||| |  |  | |||| |||||||| ||| | || |||||||| ||  |||| ||||| |||||||||    ||    
T  73488 caagttcaacaactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtt 73389  T
Q  179 tattttcatatacccaattgtattgaaactttgattactaatga 222  Q
    || ||| |||||||||||||||||||||||||||||| ||||||    
T  73388 tacttttatatacccaattgtattgaaactttgattattaatga 73345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 14197 - 14344
Alignment:
Q  90 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 188  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||||||||| || |  | || ||||||||  | |||||| ||  | |||||| || ||    
T  14197 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactgtccctagagaggccacattattagctagtgccgtagtttattatccta 14296  T
Q  189 tacccaattgtattgaaactttgattactaatgaaatgcattaagcac 236  Q
    ||||||||||||||||| ||| ||||   ||||||||||  |||||||    
T  14297 tacccaattgtattgaatcttcgattgtaaatgaaatgctataagcac 14344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 62553 - 62490
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 227  Q
    ||||||||| |  |||||||| |||||| |||||||||||||||| | |||| |||||||||||    
T  62553 gctagtcccgctgtttattttaatatactcaattgtattgaaactcttattattaatgaaatgc 62490  T

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Target: scaffold0789 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 4281 - 4201
Alignment:
Q  164 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 244  Q
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T  4281 gctagtcccgccatttaatatgatatacccacttgtattgaaactattattatcaatgaaatgctataagcacgtttccct 4201  T

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