View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_25 (Length: 317)

Name: NF4533_low_25
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_25
NF4533_low_25
[»] chr2 (2 HSPs)
chr2 (176-291)||(38933356-38933469)
chr2 (89-128)||(38933315-38933354)
[»] chr4 (2 HSPs)
chr4 (223-300)||(56160248-56160325)
chr4 (85-141)||(56160161-56160217)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 38933356 - 38933469
Alignment:
Q  176 catggagaaattaaattaaagaccgattatacaagttgatcacatcgcatgcacaaaacattatatgtgatgacaactaagcatgatattaaagaggttg 275  Q
    |||||||||||||||||||||||  ||||||||||||||  | ||| |||| |||||||||||||||||||| |||||||||||||||||||||| |||     
T  38933356 catggagaaattaaattaaagactaattatacaagttga--atatcacatggacaaaacattatatgtgatgccaactaagcatgatattaaagatgtta 38933453  T
Q  276 agtgcttgcactacta 291  Q
    ||||||||||| ||||    
T  38933454 agtgcttgcaccacta 38933469  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 38933315 - 38933354
Alignment:
Q  89 atatgcttgccttcgatttttcgtctaaaatctcaaataa 128  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  38933315 atatgcttgccttcaatttttcgtctacaatctcaaataa 38933354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 56160248 - 56160325
Alignment:
Q  223 catgcacaaaacattatatgtgatgacaactaagcatgatattaaagaggttgagtgcttgcactactaacatgatga 300  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  56160248 catgaacaaaacattatatgtgatgccaactaagcatgatattaaagatgttgagtgcttgcactactacgatgatga 56160325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 56160161 - 56160217
Alignment:
Q  85 caacatatgcttgccttcgatttttcgtctaaaatctcaaataagcataagtgatga 141  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  56160161 caacatatgcttgccttcgatttttcgtctacaatctcaaataagcataagtgatga 56160217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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