View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_27 (Length: 315)
Name: NF4533_low_27
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 53791837 - 53792135
Alignment:
| Q |
1 |
ttctttcctttctccatatagtcttcttaatctcttctatcattcacactgcttactcattttctgggtatatatttttacattgccgatccattattat |
100 |
Q |
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| T |
53791837 |
ttctttcctttctccatatagtcttcttaatctcttctatcattcacactgcttactcattttctgggtatatatttttacattgccgatccattattat |
53791936 |
T |
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| Q |
101 |
atctataaatttttcttcttcatattcactaacctaggtgcttgacactgtctataagaagcaatcattacaaatttctgcaggctaaactctacagaag |
200 |
Q |
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| T |
53791937 |
atctataaaattttcttcttcatattcactaacctaggtgcttgacactgtctataagaagcaaccattacaaatttctgcaggctaaactctacagaag |
53792036 |
T |
|
| Q |
201 |
ctcatggtaaaggctacatacaagggcttgttgtcgaagaattcacttttcctgcaaaatcatcagttcccttcaatagttgtcatgcttctaccattg |
299 |
Q |
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| T |
53792037 |
ctcatggtaaaggctacatacaagggcttgttgtcgaagaattcacttttcctgcaaaatcatcagttcccttcaatagttgtcatgcttctaccattg |
53792135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 53782963 - 53782999
Alignment:
| Q |
263 |
tcagttcccttcaatagttgtcatgcttctaccattg |
299 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
53782963 |
tcagctcccttcaataattgtcatgcttctaccattg |
53782999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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