View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_28 (Length: 311)
Name: NF4533_low_28
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 6492601 - 6492327
Alignment:
| Q |
20 |
aagaaacatagaaatattagagaattatactcgtcttgatttactgcctcttttctggacattataattacaaatattggagtatttggtgaataatgat |
119 |
Q |
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| T |
6492601 |
aagaaacatggaaatagtagagaattatactcgtcttgatttactgcctcttttctggacattataattacaaatattggagtatttggtgaataatgat |
6492502 |
T |
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| Q |
120 |
gattaacatgatatatgaattatgagtaatttgaattctataaagcatgtttccctttccctnnnnnnnnnntagaataaagcatgtttcccggtccgta |
219 |
Q |
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| T |
6492501 |
gattaacatgatatatgaattatgagtaatttgaattctataaagcatgtttccctttccct-aaaaaaaaatagaataaagcatgtttcccagtccgta |
6492403 |
T |
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| Q |
220 |
atttgtcaacactcgatataaaattgttcttatatgttggctgattagatagttaacagaatcccaaagtgaagat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6492402 |
atttgtcaacactcgatataaaattgttcttatatgttggctgattagatagttaacagaatcccaaagtgaagat |
6492327 |
T |
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