View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4533_low_30 (Length: 298)
Name: NF4533_low_30
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 42192722 - 42192463
Alignment:
| Q |
25 |
tctaacaccatgacaaaaaggaataatagaatttcaattattgtgtgtattacaattggcaatacaaaattacatatatcagttattcttaataattgta |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42192722 |
tctaacaccatgtcaaaaaggaataatagaatttcaattattgtgtgtattacaattggcgatacaaaattacatatatcggttattcttaataattgta |
42192623 |
T |
|
| Q |
125 |
caaggagaaaaataagaatgctattaaaggttattcgtaatatcatggttgacccttaaaagagggattttgacaataaagtgtatc-nnnnnnnaaatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42192622 |
caaggagaaaaataagaatgctattaaaggttattcgtaatatcatggttgacccttaaaagagggattttgacaataaagtgtatcttttttttaaatg |
42192523 |
T |
|
| Q |
224 |
gcaaatattattctcgtcgagtttatgcaagtcgcacaatcactcaacggatggaaaaag |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42192522 |
gcaaatattattctcgtcgagtttatgcaagtcgcacaatcactcagcggatggaaaaag |
42192463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 45982013 - 45981857
Alignment:
| Q |
38 |
caaaaaggaataatagaatttcaattattgtgtgtattacaattggcaatacaaaattacatatatcagttattcttaataattgtacaaggagaaaaat |
137 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | ||||||||||||||| |
|
|
| T |
45982013 |
caaaaaggaagaatagaatttcaattattgtgtgtattacaattactgatacagaattacatatat--------------aactatacaaggagaaaaat |
45981928 |
T |
|
| Q |
138 |
aagaatgctattaaaggttattcgtaatatcatggttgacccttaaaagagggattttgacaataaagtgt |
208 |
Q |
| |
|
||||||||||||||| | ||||| |||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
45981927 |
aagaatgctattaaaagctattcttaatatcacagttgacccttaaaggagggatttttacaataaagtgt |
45981857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 527072 - 527235
Alignment:
| Q |
31 |
accatgacaaaaaggaataatagaatttcaattattgtgtgtattacaattggcaatacaaaattacatatatcagttattcttaataattgtacaagga |
130 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | |||||||| |
|
|
| T |
527072 |
accatgtcaaaaaggaagaatagaatttcaattattgtgtgtattacaattactgatacagaattacatatat--------------aactatacaagga |
527157 |
T |
|
| Q |
131 |
gaaaaataagaatgctattaaaggttattcgtaatatcatggttgacccttaaaagagggattttgacaataaagtgt |
208 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
527158 |
gaaaaataagaatgctattaaaagctattcttaatatcacagttgacccttaaaggagggatttttacaataaagtgt |
527235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 522314 - 522470
Alignment:
| Q |
38 |
caaaaaggaataatagaatttcaattattgtgtgtattacaattggcaatacaaaattacatatatcagttattcttaataattgtacaaggagaaaaat |
137 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | ||||||||||||||| |
|
|
| T |
522314 |
caaaaaggaagaatagaatttcaattattgtgtgtattacaattactgatacagaattacatatat--------------aactatacaaggagaaaaat |
522399 |
T |
|
| Q |
138 |
aagaatgctattaaaggttattcgtaatatcatggttgacccttaaaagagggattttgacaataaagtgt |
208 |
Q |
| |
|
||||||||||||||| | ||||| |||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
522400 |
aagaatgctattaaaagctattcttaatatcacagttgacccttaaaggagggatttttacaataaagtgt |
522470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 4222336 - 4222375
Alignment:
| Q |
223 |
ggcaaatattattctcgtcgagtttatgcaagtcgcacaa |
262 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4222336 |
ggcaaatattattctcgtcgagattatgcaagacgcacaa |
4222375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 6902042 - 6901999
Alignment:
| Q |
219 |
aaatggcaaatattattctcgtcgagtttatgcaagtcgcacaa |
262 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
6902042 |
aaatggcaaacattattctcgtcgagtatatgcaagacgcacaa |
6901999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University