View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_32 (Length: 295)
Name: NF4533_low_32
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 34104204 - 34103944
Alignment:
| Q |
18 |
ataacgttgcatcattagctttcgaggagctcaaaacaaccatcacattggtactgaacattgattcctccggctccgggtaaagtattgcttacttctt |
117 |
Q |
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| T |
34104204 |
ataacgttgcatcattagctttcgaggagctcaaaacaaccatcacattggtactgaacattgattcctccggctccgggtaaagtattgcttacttctt |
34104105 |
T |
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| Q |
118 |
caaaaaatcgagtcataggatgcaaaagcaataaacttatgtgtgggaatcatatgcaatttttgaagcaatgggaaagtttcaacattacttaatttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34104104 |
caaaaaatcgagtcataggatgcaaaagcaataaacttatgtgtgggaatcatatgcaatttttgaagcaatgggaaagtttcaacattacttaatttgt |
34104005 |
T |
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| Q |
218 |
cacaagttcatcattagacttttcaaaaagtcatgaagtctagcactgaccaagctgttca |
278 |
Q |
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||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34104004 |
cacaagttcattatgagacttttcaaaaagtcgtgaagtctagcactgaccaagctgttca |
34103944 |
T |
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