View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_33 (Length: 294)
Name: NF4533_low_33
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 20636929 - 20636660
Alignment:
| Q |
8 |
gtcaatgtccttcttgagaagtcatgtcgtattatcacttaaatcaatgatccactcctccattttgatggcataattttcaaccaatttctagaggata |
107 |
Q |
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| T |
20636929 |
gtcaatgtccttcttgagaagtcatgtcgtattatcactttaatcaatgatccactcctccattttgatggcacaattttcaaccaatttctagaggata |
20636830 |
T |
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| Q |
108 |
catcgattccaacatattcttgctgacaattttcaccaacaagaaagaaaatgagttcaccaggccgagcattataattttcattgtcctttaagacgaa |
207 |
Q |
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| T |
20636829 |
catcgattccaacatattcttgttgacaattttcaccaacaagaaagaaaatgagttcaccaggccgagcattataattttcgttgtcctttaagacgaa |
20636730 |
T |
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| Q |
208 |
cgagatgacggagacaaagttggcggtgtcaccggtgtttttattccaaataggaactgctgttgaatac |
277 |
Q |
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| T |
20636729 |
cgagatgacggagacaaagttggcggtgtcaccggtgtttttatttcaaataggaattgctggtgaatac |
20636660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 20630889 - 20630605
Alignment:
| Q |
8 |
gtcaatgtccttcttgagaagtcatgtcgtattatcacttaaatcaatgatccactcctccattttgatggcataattttcaaccaatttctagaggata |
107 |
Q |
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| T |
20630889 |
gtcaatgtcttactcgaggagtcatatcgtatcaccacttcaatcaatgattcactcctccgtgttgatggtacaattttcaacctatttctagagtata |
20630790 |
T |
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| Q |
108 |
catcgattccaacat-------------at--tcttgctgacaattttcaccaacaagaaagaaaatgagttcaccaggccgagcattataattttcatt |
192 |
Q |
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| T |
20630789 |
catcaactccaatatgcgaatactttagatcatcttgttcaaaattttcaccaacaagaaagaaaacgagttcaccaggccaaacattataatattcgtt |
20630690 |
T |
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| Q |
193 |
gtcctttaagacgaacgagatgacggagacaaagttggcggtgtcaccggtgtttttattccaaataggaactgctgttgaatac |
277 |
Q |
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| T |
20630689 |
gtactttaagacaaatgagaagacggagacaaagctgttagtgtcaccggtgtattcatcccaaataagaattgatgttgaatac |
20630605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 20611428 - 20611276
Alignment:
| Q |
125 |
tcttgctgacaattttcaccaacaagaaagaaaatgagttcaccaggccgagcattataattttcattgtcctttaagacgaacgagatgacggagacaa |
224 |
Q |
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||||| ||| |||||||||||||||||||||| | ||||| |||||||||| || |||| ||||| |||||| ||| |||||| |||| | || | || |
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| T |
20611428 |
tcttgttgaaaattttcaccaacaagaaagaagacgagtttaccaggccgatcaatatatttttctttgtccattacgacgaaagagaaggtggtgttaa |
20611329 |
T |
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| Q |
225 |
agttggcggtgtcaccggtgtttttattccaaataggaactgctgttgaatac |
277 |
Q |
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| T |
20611328 |
agtttgcaatgttaccggtgtttttattccaaataggaattggtgtcgaatac |
20611276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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