View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_35 (Length: 278)
Name: NF4533_low_35
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_35 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 249844 - 250104
Alignment:
| Q |
18 |
ttttttgaagaaaattaaacaataaaattcatctcttttctctttagactagaaaccctcatcttctcaagcaaaacttaatgaactcaaaagaaattta |
117 |
Q |
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| T |
249844 |
ttttttgaagaaaattaaacaataaaattcatctcttttctctttagactagaaaccctcatcttctcaagcaaaacttgatgaactcaaaagaaattta |
249943 |
T |
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| Q |
118 |
ttaaatttataaaaagataataattatatgaaagacccttttgatttaatttaaacaacaaaattcatctcttttctcttcaggaccagaaatcctcatc |
217 |
Q |
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| T |
249944 |
ttaaatttataaaaagataataattatatgaaagacccttttgatttaatttaaacaacaaaattcatctcttttctctttaggaccagaaatcctcatc |
250043 |
T |
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| Q |
218 |
ttctcaaacaaaacttgatgaactcaaaagaaattaattaaatttataaaaaattaactag |
278 |
Q |
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| T |
250044 |
ttctcaaacaaaacttgatgaactcaaaagaaattaattaaatttataaaaaattaactag |
250104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 249994 - 250128
Alignment:
| Q |
32 |
ttaaacaataaaattcatctcttttctctttag-actagaaaccctcatcttctcaagcaaaacttaatgaactcaaaagaaatttattaaatttataaa |
130 |
Q |
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| T |
249994 |
ttaaacaacaaaattcatctcttttctctttaggaccagaaatcctcatcttctcaaacaaaacttgatgaactcaaaagaaattaattaaatttataaa |
250093 |
T |
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| Q |
131 |
aagataataattatatgaaagacccttttgatttaatt |
168 |
Q |
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| T |
250094 |
aa---attaactagatgaaagacccttttgatttaatt |
250128 |
T |
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