View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_37 (Length: 273)
Name: NF4533_low_37
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 43533622 - 43533875
Alignment:
| Q |
1 |
atttccattcaaaatatagtaacttccatggtgttactttttattgttatgatatcgtgctatcatgctaagcattcagacaatataaagaattcagaca |
100 |
Q |
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| T |
43533622 |
atttccattcaaaatatagtaacttccatggtgttactttttattgttatgatatcgtgctatcatgctaagcattcagacaatataaagaattcagaca |
43533721 |
T |
|
| Q |
101 |
aaaatacaactacataaatggcgaggtgttcaaatacagcaaaagacttcattttctacgtggaaaacaaatatgagctacacaattatnnnnnnnnngt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
43533722 |
aaaatacaactacataaatggcgaggtgttcaaatacagcaaaagac-tcattttctacgtggaaaacaaatatgagctacacaatta-aaaaaaaaagt |
43533819 |
T |
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| Q |
201 |
aaaatgaataaataataaccctactcacataactttgaattgaatatataaattga |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533820 |
aaaatgaataaataataaccctactcacataactttgaattgaatatataaattga |
43533875 |
T |
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