View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_4 (Length: 602)
Name: NF4533_low_4
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Complemental strand, 30878026 - 30877447
Alignment:
| Q |
11 |
catcatcatcatctactgtcacttgttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878026 |
catcatcatcatctactgtcacttgttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttatt |
30877927 |
T |
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| Q |
111 |
ccattgtttccaaggttgtctcctgtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatat |
210 |
Q |
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| T |
30877926 |
ccattgtttccaaggttgtctcctgtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatat |
30877827 |
T |
|
| Q |
211 |
atttggagatgctactgagagaattagtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtttctctctggttttggat |
310 |
Q |
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| T |
30877826 |
atttggagatgctactgagagaattggtaaaaatggttttgaagtaaacaatgaggtaattggaagtgggtatggttcaagtttctctctggttttggat |
30877727 |
T |
|
| Q |
311 |
agggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgagg |
410 |
Q |
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| T |
30877726 |
agggagagaggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaagaatcatagtgagg |
30877627 |
T |
|
| Q |
411 |
ccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacat |
510 |
Q |
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| T |
30877626 |
cagaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttcaacataatgcttttacat |
30877527 |
T |
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| Q |
511 |
cttcctttctttaatcattgagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggtaagt |
590 |
Q |
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| T |
30877526 |
catcctttctttaatcattcagaaaagtaatttaactccatgtttggataaaacctaaattaagcacttataaggtaagt |
30877447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 266 - 494
Target Start/End: Complemental strand, 39332933 - 39332708
Alignment:
| Q |
266 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
365 |
Q |
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|||| ||||| ||| ||||||||| || || |||||||| ||||| || | ||| |||||||| |||||| |||| ||| ||||| |||||||||| | |
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| T |
39332933 |
gtaaatggaaatggatatggttcatcttcttcactggttttagatagagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtat |
39332834 |
T |
|
| Q |
366 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
465 |
Q |
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| T |
39332833 |
cacct---gagagaagtattgaagctttgaagaatcatagtgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgt |
39332737 |
T |
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| Q |
466 |
cattccaggtgctttgaaggttagttcaa |
494 |
Q |
| |
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|||||||| ||| ||||||||||||| |
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| T |
39332736 |
tattccaggggctaataaggttagttcaa |
39332708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 266 - 403
Target Start/End: Complemental strand, 30203705 - 30203571
Alignment:
| Q |
266 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
365 |
Q |
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|||| ||||| ||| ||||||||| || || |||||||||||||| || | ||| ||| |||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
30203705 |
gtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtggaggcaactgtgaaattagaaagaaagggtgtgt |
30203606 |
T |
|
| Q |
366 |
ccactacagagagaagtgttgaagctttgaagaatcat |
403 |
Q |
| |
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| || ||||||||| |||||||||||||||||||| |
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| T |
30203605 |
cacct---gagagaagtattgaagctttgaagaatcat |
30203571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 266 - 466
Target Start/End: Complemental strand, 12102677 - 12102483
Alignment:
| Q |
266 |
gtaattggaagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgt |
365 |
Q |
| |
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|||| ||||||||| ||||||||| || || |||||||||||||| || | ||| |||||||| |||||| |||| ||| | ||| |||||||||||| |
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| T |
12102677 |
gtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtggaggcagctgtgaaattagaaagaaagggtgtgt |
12102578 |
T |
|
| Q |
366 |
ccactacagagagaagtgttgaagctttgaagaatcatagtgaggccgaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgt |
465 |
Q |
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| || | ||||||| | ||||||||||||||||||||||| || || |||||||||||| || |||||| |||||||||||| |||||| |||| |
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| T |
12102577 |
cacct---gggagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaattaatttacatcttgatacacttcgtagtgt |
12102484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 17146603 - 17146474
Alignment:
| Q |
274 |
aagtgggtatggttcaagtttctctctggttttggatagggagagaggggagcttgtagaggcacctgttaaaatggaaggaaagggtgtgtccactaca |
373 |
Q |
| |
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|||||| ||||||||| || || |||||||||||||| || | ||| ||||||| |||||| |||| ||| | ||| |||||||||| ||| | |
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| T |
17146603 |
aagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcggaggcagctgtgaaattagaaagaaagggtgt---cac--ct |
17146509 |
T |
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| Q |
374 |
gagagaagtgttgaagctttgaagaatcatagtga |
408 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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| T |
17146508 |
gagagaagtattgaagctttgaagaatcatagtga |
17146474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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