View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_44 (Length: 242)

Name: NF4533_low_44
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_44
NF4533_low_44
[»] chr4 (5 HSPs)
chr4 (86-164)||(20631242-20631320)
chr4 (10-91)||(20631345-20631426)
chr4 (86-156)||(20637262-20637332)
chr4 (10-91)||(20637357-20637438)
chr4 (189-242)||(20637186-20637239)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 20631320 - 20631242
Alignment:
Q  86 gattagccaaaatctaattaagcaacattagctcaaaaataacatatttcaacaattggctttatttagaattttattt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20631320 gattagccaaaatctaattaagcaacattagctcaaaaataacatatttcaacaattgcctttatttagaattttattt 20631242  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 20631426 - 20631345
Alignment:
Q  10 catcatcatttaagtagattgtaatttttgatttattattagaatttagaacccaattcgagttgagatttttatagattag 91  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  20631426 catcatcacttaagtagattgtaatttttcatttattattataatttagaacccgattcgagttgagatttttatagattag 20631345  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 20637332 - 20637262
Alignment:
Q  86 gattagccaaaatctaattaagcaacattagctcaaaaataacatatttcaacaattggctttatttagaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  20637332 gattagccaaaatctaattaagcaacattagctcaaaaataacatatttcaataattgcctttatttagaa 20637262  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 20637438 - 20637357
Alignment:
Q  10 catcatcatttaagtagattgtaatttttgatttattattagaatttagaacccaattcgagttgagatttttatagattag 91  Q
    |||||||| ||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  20637438 catcatcacttaagaagattgtaatctttgatttattattataatttagaaccctattcgagttgagatttttatagattag 20637357  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 20637239 - 20637186
Alignment:
Q  189 ggtagcatatagtccttatatttagacgtacaagttatcataacaaccattcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20637239 ggtagcatatagtccttatatttagacgtacaagttatcataacaaccattcat 20637186  T

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