View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_50 (Length: 228)
Name: NF4533_low_50
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20879920 - 20879700
Alignment:
| Q |
1 |
catcaagttaacactgttaagtctatgtacttctttttgttttggtgtttgtgattggaaattagtatttgaaaaagaaactacatttgacaaa-tttat |
99 |
Q |
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|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||||| |
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| T |
20879920 |
catcaagttatcactataaagtctatgtacttctttttgttttggtgtttgtgattggaaattagaatatgaaaaaaaaactacatttgacaaaatttat |
20879821 |
T |
|
| Q |
100 |
ataaccgtgtatctctattaggtgtggtggttaaattttttaacccattgtccgaaactggtattcttataatgcttccccttttcaaagttttcacatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
20879820 |
ataaccgtgtatctctattaggtgtggtggttaaattttgtaaccgattatcctaaactgatattcttataatgcttccccttttcaaagtcttcacatg |
20879721 |
T |
|
| Q |
200 |
aatgtacacttattaatgtat |
220 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
20879720 |
aaagtacacttattaatgtat |
20879700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 21685308 - 21685532
Alignment:
| Q |
1 |
catcaagttaacactgttaagtctatgtacttctttttgttttggtgtttgtgattggaaattagtatttgaaaaagaaa----ctacatttgacaaa-t |
95 |
Q |
| |
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|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||| | |
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| T |
21685308 |
catcaagttatcactataaagtctatgtacttctttttgttttggtgtttgtgattggaaattagaatatgaaaaaaaaaaaaactacatttgacaaaat |
21685407 |
T |
|
| Q |
96 |
ttatataaccgtgtatctctattaggtgtggtggttaaattttttaacccattgtccgaaactggtattcttataatgcttccccttttcaaagttttca |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| |||||||||||||||||||||||||||||| |||| |
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| T |
21685408 |
ttatataaccgtgtatctctattaggtgtggtggttaaattttgtaaccgattatcctaaactgatattcttataatgcttccccttttcaaagtcttca |
21685507 |
T |
|
| Q |
196 |
catgaatgtacacttattaatgtat |
220 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
21685508 |
catgaaagtacacttattaatgtat |
21685532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 22543804 - 22543583
Alignment:
| Q |
1 |
catcaagttaacactgttaagtctatgtacttctttttgttttggtgtttgtgattggaaattagtatttgaaaaagaaactacatttgac-aaatttat |
99 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||| |||||||| |
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| T |
22543804 |
catcaagttatcaatgtaaagtctatgtacttctttttattttggtgtttgtgattggaaattagaatatgaaaaagaaattacatttgacaaaatttat |
22543705 |
T |
|
| Q |
100 |
ataaccgtgtatctctattaggtgtggtggttaaattttttaacccattgtccgaaact-ggtattcttataatgcttccccttttcaaagttttcacat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
22543704 |
ataaccgtgtatctctattaggtgtggtggttaaattttgtaaccgattatcctaaactgggtattcttataatgcttccccttttcaaagtcttcacat |
22543605 |
T |
|
| Q |
199 |
gaatgtacacttattaatgtat |
220 |
Q |
| |
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||| |||||||||||||||||| |
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|
| T |
22543604 |
gaaagtacacttattaatgtat |
22543583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 43971272 - 43971173
Alignment:
| Q |
13 |
actgttaagtctatgtacttctttttgttttggtgtttgtgattggaaattagtatttgaaaaagaaactacatttg-acaaatttatataaccgtgtat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||| ||||| |
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| T |
43971272 |
actgttaagtctatgtacttctttttgttttggtgtttgtgattggaaattagaatttgaaaaggaaactacatttgaaaaaatttatataaccatgtat |
43971173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 43971176 - 43971113
Alignment:
| Q |
160 |
gtattcttataatgcttccccttttcaaagttttcacatgaatgtacacttattaatgtatcgt |
223 |
Q |
| |
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|||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
43971176 |
gtattcttataatgcttcaccttttcaaaattgtcacatgaatgtacacttattaatgtatcgt |
43971113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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