View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_6 (Length: 552)

Name: NF4533_low_6
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_6
NF4533_low_6
[»] chr8 (3 HSPs)
chr8 (1-542)||(9572357-9572898)
chr8 (73-122)||(6950208-6950257)
chr8 (73-105)||(29972965-29972997)
[»] chr6 (2 HSPs)
chr6 (70-113)||(32408827-32408870)
chr6 (75-119)||(30004777-30004821)
[»] chr7 (2 HSPs)
chr7 (73-114)||(753353-753394)
chr7 (75-107)||(47303647-47303679)
[»] chr4 (2 HSPs)
chr4 (75-114)||(24929373-24929412)
chr4 (75-112)||(8422988-8423025)
[»] chr3 (3 HSPs)
chr3 (74-113)||(43116578-43116617)
chr3 (14-60)||(28306128-28306174)
chr3 (75-119)||(37308216-37308260)
[»] chr2 (1 HSPs)
chr2 (75-113)||(9477860-9477898)
[»] chr5 (4 HSPs)
chr5 (3-60)||(9703283-9703340)
chr5 (16-76)||(41016132-41016193)
chr5 (14-62)||(14257433-14257481)
chr5 (69-113)||(39257531-39257575)


Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 9572898 - 9572357
Alignment:
Q  1 tctagaaataacctatgaaaacaacttgtaccttatatgggaacagtttgaatttattttgttattgaaatagtttatgctataaacactcaattaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572898 tctagaaataacctatgaaaacaacttgtaccttatatgagaacagtttgaatttattttgttattgaaatagtttatgctataaacactcaattaagtt 9572799  T
Q  101 gtttatcgaaacagtgcctaaaatgttcttgttgtgttacttgcaggtcgagtacggaatatacattttctcttttaccttgatgcagatactgcagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572798 gtttatcgaaacagtgcctaaaatgttcttgttgtgttacttgcaggtcgagtacggaatatacattttctcttttaccttgatgcagatactgcagttt 9572699  T
Q  201 ccgtggcctcggagatggttgaacatttggagctggcagatcatgatgtggctttcatagctgagcttattgattacttgatattgaaacttcttccttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572698 ccgtggcctcggagatggttgaacatttggagctggcagatcatgatgtggctttcatagctgagcttattgattacttgatattgaaacttcttccttg 9572599  T
Q  301 gtggaaaccttcacctgatcataattcaactggagaagtaagtctttgtagtggtactacaaatgtagattgccaaaccttaatgtcaagcccttggagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572598 gtggaaaccttcacctgatcataattcaactggagaagtaagtctttgtagtggtactacaaatgtagattgccaaaccttaatgtcaagcccttggagt 9572499  T
Q  401 tctatcttaactaatgttccctccgaaaaagttagtggtcaagatgtcttttccgagttcgatacaatttctagggaaggttttgagacagctggaaaga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572498 tctatcttaactaatgttccctccgaaaaagttagtggtcaagatgtcttttccgagttcgatacaatttctagggaaggttttgagacagctggaaaga 9572399  T
Q  501 gctgtttaaacgctgataacgctacttctgagggtgcctatg 542  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  9572398 gctgtttaaacactgataacgctacttctgagggtgcctatg 9572357  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 6950257 - 6950208
Alignment:
Q  73 gtttatgctataaacactcaattaagttgtttatcgaaacagtgcctaaa 122  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||||||    
T  6950257 gtttatgctataagcacttaattaagttgtttatctaaacaatgcctaaa 6950208  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 29972997 - 29972965
Alignment:
Q  73 gtttatgctataaacactcaattaagttgttta 105  Q
    |||||||||||||||||||||||||||||||||    
T  29972997 gtttatgctataaacactcaattaagttgttta 29972965  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 32408870 - 32408827
Alignment:
Q  70 atagtttatgctataaacactcaattaagttgtttatcgaaaca 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  32408870 atagtttatgctataaacacttaattaagttgtttatcgaaaca 32408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 30004821 - 30004777
Alignment:
Q  75 ttatgctataaacactcaattaagttgtttatcgaaacagtgcct 119  Q
    ||||||||||| ||||||||||| ||||||||| |||||| ||||    
T  30004821 ttatgctataagcactcaattaaattgtttatccaaacagagcct 30004777  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 753353 - 753394
Alignment:
Q  73 gtttatgctataaacactcaattaagttgtttatcgaaacag 114  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  753353 gtttatgctataaacacttaattaagttgtttatccaaacag 753394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 47303647 - 47303679
Alignment:
Q  75 ttatgctataaacactcaattaagttgtttatc 107  Q
    |||| ||||||||||||||||||||||||||||    
T  47303647 ttatactataaacactcaattaagttgtttatc 47303679  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 24929412 - 24929373
Alignment:
Q  75 ttatgctataaacactcaattaagttgtttatcgaaacag 114  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  24929412 ttatgttataaacactcaattaagttgtttatccaaacag 24929373  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 8422988 - 8423025
Alignment:
Q  75 ttatgctataaacactcaattaagttgtttatcgaaac 112  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaaac 8423025  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 43116578 - 43116617
Alignment:
Q  74 tttatgctataaacactcaattaagttgtttatcgaaaca 113  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  43116578 tttatgctataaacactaaattaagttgtttatccaaaca 43116617  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 28306174 - 28306128
Alignment:
Q  14 tatgaaaacaacttgtaccttatatgggaacagtttgaatttatttt 60  Q
    ||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  28306174 tatgaaaacaacttgtaacttatatgaaaacagtttgactttatttt 28306128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 37308216 - 37308260
Alignment:
Q  75 ttatgctataaacactcaattaagttgtttatcgaaacagtgcct 119  Q
    ||||||||||| |||| |||||||||||||||| |||||| ||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaacagggcct 37308260  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 9477898 - 9477860
Alignment:
Q  75 ttatgctataaacactcaattaagttgtttatcgaaaca 113  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  9477898 ttatgctataaacacttaattaagttgtttatccaaaca 9477860  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 9703283 - 9703340
Alignment:
Q  3 tagaaataacctatgaaaacaacttgtaccttatatgggaacagtttgaatttatttt 60  Q
    |||||||||| ||||||||||||||||| ||||||||  |  ||||||| ||||||||    
T  9703283 tagaaataacttatgaaaacaacttgtagcttatatgaaatgagtttgactttatttt 9703340  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41016193 - 41016132
Alignment:
Q  16 tgaaaacaacttgtaccttatatgggaacagtttgaattta-ttttgttattgaaatagttt 76  Q
    |||||||||||| || ||||||||  ||||||||||||||| ||||| ||| ||||||||||    
T  41016193 tgaaaacaacttatagcttatatgaaaacagtttgaatttatttttgctatagaaatagttt 41016132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 14257481 - 14257433
Alignment:
Q  14 tatgaaaacaacttgtaccttatatgggaacagtttgaatttattttgt 62  Q
    |||||||||| ||| || ||||||||| |||| ||||||||||||||||    
T  14257481 tatgaaaacaccttataacttatatggaaacattttgaatttattttgt 14257433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 39257531 - 39257575
Alignment:
Q  69 aatagtttatgctataaacactcaattaagttgtttatcgaaaca 113  Q
    ||||||||||||||||| | || |||||||||||||||| |||||    
T  39257531 aatagtttatgctataagcgcttaattaagttgtttatccaaaca 39257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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