View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4533_low_8 (Length: 491)

Name: NF4533_low_8
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4533_low_8
NF4533_low_8
[»] chr2 (4 HSPs)
chr2 (139-480)||(20175923-20176259)
chr2 (299-470)||(21527204-21527375)
chr2 (25-71)||(8503647-8503693)
chr2 (23-73)||(28925003-28925053)
[»] chr4 (2 HSPs)
chr4 (171-472)||(6097978-6098275)
chr4 (289-431)||(16388240-16388382)
[»] chr7 (3 HSPs)
chr7 (276-413)||(9738042-9738179)
chr7 (23-74)||(1848808-1848859)
chr7 (23-74)||(2563284-2563335)
[»] scaffold0198 (1 HSPs)
scaffold0198 (292-407)||(884-1000)
[»] scaffold0190 (1 HSPs)
scaffold0190 (299-463)||(28852-29016)
[»] scaffold0034 (1 HSPs)
scaffold0034 (23-74)||(75881-75932)
[»] scaffold1724 (1 HSPs)
scaffold1724 (313-407)||(789-883)
[»] chr8 (1 HSPs)
chr8 (16-71)||(21838774-21838829)
[»] chr6 (1 HSPs)
chr6 (299-469)||(23879836-23880006)
[»] scaffold0018 (1 HSPs)
scaffold0018 (318-383)||(39404-39469)
[»] scaffold0072 (1 HSPs)
scaffold0072 (379-431)||(61571-61623)
[»] chr5 (2 HSPs)
chr5 (299-407)||(22442300-22442408)
chr5 (22-72)||(25570383-25570433)
[»] scaffold0226 (1 HSPs)
scaffold0226 (319-448)||(10511-10640)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 139 - 480
Target Start/End: Complemental strand, 20176259 - 20175923
Alignment:
Q  139 ttgagcgcaagaatagaacttttcaagagtcagcaagggtaatgttacatgccaaaaaacttccgtattatttttgggttgaagccattaagagtgccta 238  Q
    |||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||  | || ||| |||| | || |||   ||| || | | | |     
T  20176259 ttgaacgcaaaaatagaactttgcaagagtccgcaagggttatgttacatgctaaaaagttaccatataatttctaggctgacatcatgaacactacttg 20176160  T
Q  239 ctacatccataatcgtgttaccctaaggtctggtacgtacctcttctacactctatgaactatggaaagaaaggaaaccaactgtcaaatattttaatgt 338  Q
     ||||| || |||| |||||| ||||||||| |||| |    ||| ||| |||||||||||||||||||  || || |||||||| ||||||||| ||||    
T  20176159 ttacattcagaatcatgttactctaaggtctagtactt----cttatactctctatgaactatggaaaggtagaaagccaactgtgaaatattttcatgt 20176064  T
Q  339 ttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaaaagtgatgaaagaatatgtcttggttactccactaaaagt 438  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| || | |    
T  20176063 ttttgggagtaagtgctacatctaggcagatagtgaacaaagaagaaagatggatcccaaaagtgatgaaagaatat-tcctggttactccacgaacaat 20175965  T
Q  439 atagcctacatggtgttcaattccagaaccaatattatgatg 480  Q
    | |||||| | |||| ||||||||| |||||||| |||||||    
T  20175964 agagcctataaggtgatcaattccaaaaccaatactatgatg 20175923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 470
Target Start/End: Complemental strand, 21527375 - 21527204
Alignment:
Q  299 tatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaa 398  Q
    ||||||| | ||| ||||| || ||||||||||||||||||||||| || || || |||||  |||| ||| | || || |||||||| |||||||||||    
T  21527375 tatggaagggaagaaaacctacagtcaaatattttaatgtttttggtagcaaatgttacatagtggcagatagagatcacagaaggaaaatggatcccaa 21527276  T
Q  399 aagtgatgaaagaatatgtcttggttactccactaaaagtatagcctacatggtgttcaattccagaaccaa 470  Q
    |||||||||| | || | |||||| ||||| || || || | ||| ||||  || |||||||||||||||||    
T  21527275 aagtgatgaagggatttttcttggatactctacaaacagcagagcttacagagttttcaattccagaaccaa 21527204  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 8503647 - 8503693
Alignment:
Q  25 aatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaa 71  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  8503647 aatttgaaatctaaccaattttcaggtaaggtatcgaaagattgcaa 8503693  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 28925053 - 28925003
Alignment:
Q  23 tgaatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaacg 73  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  28925053 tgaatttgaaatctaaccaattttcaggtaaggagaaggaagattgcaacg 28925003  T

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Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 171 - 472
Target Start/End: Original strand, 6097978 - 6098275
Alignment:
Q  171 gcaagggtaatgttacatgccaaaaaacttccgtattatttttgggttgaagccattaagagtgcctactacatccataatcgtgttaccctaaggtctg 270  Q
    |||||||| ||||||||||||||||| ||||| ||  |||| |||| | ||||||| || | ||| |  |||||||| ||| ||||||| ||||| |||     
T  6097978 gcaagggttatgttacatgccaaaaagcttccctaacatttatgggctaaagccataaacactgcttgttacatccacaattgtgttactctaagatct- 6098076  T
Q  271 gtacgtacctcttctacactctatgaactatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatc 370  Q
     ||  |||||||||||| ||||||||||| |||||||  || || |||||||| ||||||||| |||| |||||||| ||||| ||||||||||| |  |    
T  6098077 -ta--tacctcttctactctctatgaactgtggaaaggtagaaagccaactgtgaaatattttcatgtctttgggagcaagtgttacatcttggcaggcc 6098173  T
Q  371 gtgaacaaagaaggaagatggatcccaaaagtgatgaaagaatatgtcttggttactccactaaaagtatagcctacatggtgttcaattccagaaccaa 470  Q
     |||||||||||| |||||||||||||||||||||||| ||||||   |||| ||||||||||| | || ||| ||||| ||||||||||||| ||||||    
T  6098174 ctgaacaaagaagaaagatggatcccaaaagtgatgaaggaatattctttggctactccactaacaatagagcttacatagtgttcaattccataaccaa 6098273  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 16388382 - 16388240
Alignment:
Q  289 ctctatgaactatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaaga 388  Q
    |||||||| |||||||| | ||| ||||| ||||||||||||||| |||| ||||| ||||||| |||||| ||| ||||| | ||  | ||||||||||    
T  16388382 ctctatgagctatggaagggaagaaaacctactgtcaaatattttcatgtgtttggtagtaagtactacattttgtctgatagagattacagaaggaaga 16388283  T
Q  389 tggatcccaaaagtgatgaaagaatatgtcttggttactccac 431  Q
    ||||||| || ||||| ||| |||| | |||||||||||||||    
T  16388282 tggatccaaagagtgaggaaggaatttttcttggttactccac 16388240  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 276 - 413
Target Start/End: Original strand, 9738042 - 9738179
Alignment:
Q  276 tacctcttctacactctatgaactatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaa 375  Q
    |||||||||||| ||||||||||| ||||||| ||| |||   ||||||||||||||| |||| ||||  ||||| |||||||| |||||| || | |||    
T  9738042 tacctcttctactctctatgaactgtggaaaggaagaaaatatactgtcaaatattttcatgtgtttgaaagtaaatgctacatattggctaatagagaa 9738141  T
Q  376 caaagaaggaagatggatcccaaaagtgatgaaagaat 413  Q
    |||  ||||||||||||||  |||||||||||| ||||    
T  9738142 caagtaaggaagatggatcttaaaagtgatgaaggaat 9738179  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 1848808 - 1848859
Alignment:
Q  23 tgaatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaacgc 74  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1848808 tgaatttgaaatctaaccaattttcaggtaaggagacggaagattgcaacgc 1848859  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 2563335 - 2563284
Alignment:
Q  23 tgaatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaacgc 74  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  2563335 tgaatttgaaatctaaccaattttcaggtaaggagacgaaagattgcaacgc 2563284  T

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Target: scaffold0198 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 1000 - 884
Alignment:
Q  292 tatgaactatggaaag-aaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatg 390  Q
    |||||||| ||||||| |||  ||||||||||||||||| ||  |||||||||| || ||||| ||||||||||| ||| | ||| | ||||||||||||    
T  1000 tatgaactgtggaaaggaaaaaaaaccaactgtcaaatacttccatgtttttggaagcaagtgttacatcttggcagatagagaatacagaaggaagatg 901  T
Q  391 gatcccaaaagtgatga 407  Q
    |||||||| ||||||||    
T  900 gatcccaagagtgatga 884  T

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Target: scaffold0190 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 299 - 463
Target Start/End: Original strand, 28852 - 29016
Alignment:
Q  299 tatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaa 398  Q
    |||||||||  || ||||| ||||||||||||||  | || ||||| || ||||||||||||||| ||||| | || || | ||||||||||||||| ||    
T  28852 tatggaaagggagaaaacctactgtcaaatatttccacgtgtttggtagcaagtgctacatcttgtctgatagagatcacaaaaggaagatggatcctaa 28951  T
Q  399 aagtgatgaaagaatatgtcttggttactccactaaaagtatagcctacatggtgttcaattcca 463  Q
     | ||||||| |||| | |||||||||||| |||||||| | |||||| | ||| || |||||||    
T  28952 gaatgatgaaggaatttttcttggttactctactaaaagcagagcctatagggtctttaattcca 29016  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 75932 - 75881
Alignment:
Q  23 tgaatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaacgc 74  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  75932 tgaatttgaaatctaacccattttcaagtaaggaaacggaagattgcaacgc 75881  T

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Target: scaffold1724 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1724
Description:

Target: scaffold1724; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 883 - 789
Alignment:
Q  313 aaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaaaagtgatga 407  Q
    ||||||| ||| ||||||||| |||||||||| || ||||| ||||| || || ||| | ||||| |||||||| ||||||||||| ||||||||    
T  883 aaaccaattgttaaatattttcatgtttttggaagcaagtgttacatattagcagatagagaacatagaaggaaaatggatcccaagagtgatga 789  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 21838829 - 21838774
Alignment:
Q  16 tcaatactgaatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaa 71  Q
    |||||| | |||||||||||||||||||||||||||||||| | ||||||| ||||    
T  21838829 tcaataattaatttgaaatctaaccaattttcaggtaaggagttggaagatcgcaa 21838774  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 469
Target Start/End: Original strand, 23879836 - 23880006
Alignment:
Q  299 tatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaa 398  Q
    ||||||| | ||| ||||| |||||||| |||||| |||||||||| || || | ||||||  ||||  || | ||| | |||||||| |||||||||||    
T  23879836 tatggaagggaagaaaacctactgtcaagtattttcatgtttttggtagcaaattctacatactggcatatagagaatacagaaggaaaatggatcccaa 23879935  T
Q  399 aagtgatgaaagaatatgtcttggttactccactaaaagtatagcctacatggtgttcaattccagaacca 469  Q
    |||||||||| | || | |||||| ||||| || || || | ||| ||||  || |||||||||| |||||    
T  23879936 aagtgatgaagggatttttcttggatactctacaaatagcagagcttacagagttttcaattccacaacca 23880006  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 39469 - 39404
Alignment:
Q  318 aactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaag 383  Q
    |||||| ||||| ||| |||| || |||||||| |||||||||||||| ||||||||| |||||||    
T  39469 aactgtaaaatactttcatgtcttcgggagtaaatgctacatcttggcagatcgtgaataaagaag 39404  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 61571 - 61623
Alignment:
Q  379 agaaggaagatggatcccaaaagtgatgaaagaatatgtcttggttactccac 431  Q
    ||||||||||||||||| || ||||||||| |||||  |||||||||||||||    
T  61571 agaaggaagatggatccaaagagtgatgaatgaataattcttggttactccac 61623  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 407
Target Start/End: Original strand, 22442300 - 22442408
Alignment:
Q  299 tatggaaagaaaggaaaccaactgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaa 398  Q
    ||||||||| ||||||||| | || |||||| ||| || ||||||| || ||||||||||| || || ||| | ||||| | |||||| |||||||||||    
T  22442300 tatggaaaggaaggaaacctattgacaaatactttcatctttttggaagcaagtgctacattttcgcagatagagaacataaaaggaaaatggatcccaa 22442399  T
Q  399 aagtgatga 407  Q
     | ||||||    
T  22442400 gattgatga 22442408  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 25570383 - 25570433
Alignment:
Q  22 ctgaatttgaaatctaaccaattttcaggtaaggaatcggaagattgcaac 72  Q
    |||||||| |||| ||||||||||| ||||||||||||  |||||||||||    
T  25570383 ctgaatttcaaatttaaccaatttttaggtaaggaatcaaaagattgcaac 25570433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 448
Target Start/End: Original strand, 10511 - 10640
Alignment:
Q  319 actgtcaaatattttaatgtttttgggagtaagtgctacatcttggctgatcgtgaacaaagaaggaagatggatcccaaaagtgatgaaagaatatgtc 418  Q
    ||||||||||||||  |||| ||||| || ||||| || ||||||  |||| | ||  | |||||||||||| |||| || ||||||||| |||| | ||    
T  10511 actgtcaaatatttccatgtgtttggtagcaagtgttatatcttgtatgatagagactatagaaggaagatgaatcctaagagtgatgaaggaatttttc 10610  T
Q  419 ttggttactccactaaaagtatagcctaca 448  Q
    |||| |||||||| || || | ||||||||    
T  10611 ttggatactccacaaacagcagagcctaca 10640  T

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