View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4533_low_9 (Length: 488)
Name: NF4533_low_9
Description: NF4533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4533_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 315 - 470
Target Start/End: Original strand, 7319901 - 7320056
Alignment:
| Q |
315 |
ccactcgtttttgccttctagactcatgaattctcacaagtctatgagtttatccgtgagtttgacaattatattgttctgaagttaacttatataattg |
414 |
Q |
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| T |
7319901 |
ccactcgtttttgccttctagactcatgaattctcacaagtctataagtttatccgtgagtttgacaattatattgttctaaagttaacttatataattg |
7320000 |
T |
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| Q |
415 |
nnnnnnnctttggttgatgaagtagaaaacaccacttgaaattcacacacacaact |
470 |
Q |
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| T |
7320001 |
tttttttctttggttgatgaagtagaaaacaccacttgaaattcacacacacaact |
7320056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 7319761 - 7319861
Alignment:
| Q |
175 |
ccacatcagcaaatgaaaattaggtggataatgaaatgatataatatattttgatataatatatttcacatctgcaaagatgagctcaaatgtggtggcg |
274 |
Q |
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| T |
7319761 |
ccacatcagcaaataaaaattaggtggataatgaaatgatataatatattttgatataatatatttcacatctgcaaagatgaactcaaatgtggtggcg |
7319860 |
T |
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| Q |
275 |
t |
275 |
Q |
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| T |
7319861 |
t |
7319861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 7319594 - 7319686
Alignment:
| Q |
9 |
gacatcatcaaaaccttgggagactagacacttgagagataatggcattcnnnnnnnnnnnnntacaattataaaagaaaggcttaattgtag |
101 |
Q |
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| T |
7319594 |
gacaacatcaaaaccttgggagactagacacttgagagataatggcattcaaaaaaagaaaaatacaattataaaagaaaggcttaattgtag |
7319686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 1457330 - 1457363
Alignment:
| Q |
191 |
aaattaggtggataatgaaatgatataatatatt |
224 |
Q |
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| T |
1457330 |
aaattaggtggataatgaaatgatataatttatt |
1457363 |
T |
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