View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4534-Insertion-1 (Length: 538)
Name: NF4534-Insertion-1
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Complemental strand, 52725244 - 52724744
Alignment:
| Q |
7 |
atcaaaagcattgacattgctgttgttaataggtggccaccatttgggtaatctcctttgagaaacaaccttattattattactattcttcaaagacagt |
106 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52725244 |
atcaaaagcattgacattgttgttgttaataggtggccaccatttgggtaatttcctttgagaaacaaccttattattattactattcttcaaagaacgt |
52725145 |
T |
|
| Q |
107 |
ttaatcggaagcgcaggggttgtgctgtgaatgggactcaatccaataaccacctcttttccaccaagactccggtctctccgcaccataatacccttat |
206 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725144 |
ttaatcggcagagcaggggttgtgctgtgaatgggactcaatccaataaccacctcttttccaccaagactccggtctctccgcaccataatacccttat |
52725045 |
T |
|
| Q |
207 |
tgttattattgtagctagatgcgtttcgactactccacgacgcatacctagaaaccaattcaaagaataccctcaaaacagaaaaagcgatgagggtcaa |
306 |
Q |
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||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52725044 |
tgt---------agctagatgggtttcgactactccacgacgcaaacctagaaaccaattcaaagaataccctcaaaacagaaaaagcgatgagagtcaa |
52724954 |
T |
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| Q |
307 |
agcagctgaagttcctacgaagtgcaaggttgaagggcgacatgaaatgatgactcttcggttatggtcaatagtgaatagggtctgtaaatcgcggtat |
406 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52724953 |
agcagctgaagttcctacgaagtgcaaggtggaagggcgacatgaaatgatgactcttcggttatggtcaatagtgaatagggtctgtaaatcgcggtat |
52724854 |
T |
|
| Q |
407 |
gcctctttaccagatgaaacgaattgacgaatattggaatgaaaggaagggaagattgagaggtctatcacggtttcgagcttgggctcagagaaggtgg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52724853 |
gcctctttaccagatgaaacgaattgacgaatattggaatgaaaggaagggaagattgagaggtctatgacggtttcgagcttgggctcagagaaggtgg |
52724754 |
T |
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| Q |
507 |
tgatgatggt |
516 |
Q |
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| T |
52724753 |
tgatggtggt |
52724744 |
T |
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