View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4534-Insertion-3 (Length: 213)

Name: NF4534-Insertion-3
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4534-Insertion-3
NF4534-Insertion-3
[»] chr7 (13 HSPs)
chr7 (8-210)||(31576385-31576587)
chr7 (16-210)||(31595450-31595644)
chr7 (8-210)||(31605051-31605253)
chr7 (8-210)||(31608645-31608847)
chr7 (9-210)||(31614920-31615121)
chr7 (8-210)||(31618655-31618857)
chr7 (12-192)||(31585799-31585979)
chr7 (8-210)||(31541407-31541606)
chr7 (26-210)||(31572485-31572666)
chr7 (8-210)||(33304810-33305014)
chr7 (8-210)||(31532750-31532949)
chr7 (28-210)||(31438658-31438840)
chr7 (61-174)||(32351742-32351855)
[»] chr1 (1 HSPs)
chr1 (10-213)||(52173949-52174152)
[»] chr4 (1 HSPs)
chr4 (8-210)||(15063005-15063207)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31576385 - 31576587
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  31576385 ttatccaatgatccattgggcatgaattcatatattagtgctcttttgtccacctcataacaaaagcctaaaagggacacaatgttcatgtgtgatgttc 31576484  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
     ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||   |||| |||||||    
T  31576485 gactaatgctagcaacttcatttatgaattcttctccatttcctttggattcatttattactttcaccgccacttgacgaccatcaattaaacttgcttt 31576584  T
Q  208 gta 210  Q
    |||    
T  31576585 gta 31576587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 31595450 - 31595644
Alignment:
Q  16 tgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttctactaatg 115  Q
    |||||||| |||||||||||||||||||||||||||||| ||  |||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||    
T  31595450 tgatcctttgggcatgaactcatatattagtgctcttttatttgcctcgtaacaataacctaaaagtgacacaatgttcatgtgtgatgttctactgatg 31595549  T
Q  116 ctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgctttgta 210  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  31595550 ctagcaacttcatttatgaactcttccccatttccttttgactcgtttattactttcactgccacttgacgaccatccgttaaacttgctttgta 31595644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31605051 - 31605253
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  31605051 ttatccaatgatccattgggcatgaattcatatattagtgctcttttgtccacctcataacaaaagcctaaaagggacacaatgttcatgtgtgatgttc 31605150  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
     ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||   |||| |||||||    
T  31605151 gactaatgctagcaacttcatttatgaattcttctccatttcctttggattcatttattactttcaccgccacttgacgaccatcaattaaacttgcttt 31605250  T
Q  208 gta 210  Q
    |||    
T  31605251 gta 31605253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31608645 - 31608847
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    |||||||  ||||||| ||||||| | ||||||||||| |||||||| ||| ||||||||||| | ||||  || ||||||||||||| |||||||||||    
T  31608645 ttatccagggatcctttgggcatgtattcatatattagcgctcttttattcacctcataacaaaaacctaagagtgacacaatgttcaggtgtgatgttc 31608744  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  31608745 tactgatgctagcaacttcatttatgaactcttccccatttccttttgactcgtttattactttcactgccacttgacgaccatccgttaaacttgcttt 31608844  T
Q  208 gta 210  Q
    |||    
T  31608845 gta 31608847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 31614920 - 31615121
Alignment:
Q  9 tatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttct 108  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||| ||||||     
T  31614920 tatccaatgatcctttggacatgaattcatatattagtgctcttttgttcacctcataacaaaagcctaaaagggatacaatgttcatgtgtaatgttcg 31615019  T
Q  109 actaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgctttg 208  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| || |||| ||||||||| ||||| |||||||||||   |||| ||||||||    
T  31615020 actaatgctagcaacttcatttatgaattcttctccatttccctttgactcatttagtactttcaccgccacatgacgaccatcaattaaacttgctttg 31615119  T
Q  209 ta 210  Q
    ||    
T  31615120 ta 31615121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31618655 - 31618857
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||||| | || |||||||| |||| ||| |||||||||||||| |||||||| |    
T  31618655 ttatccaatgatcctttgggcatgaattcatatattagcgctcttttgttctcttcgtaacaatatcctaaaagcgacacaatgttcatatgtgatgtcc 31618754  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||  ||| ||||||||||||||||||||||||||| ||   ||||| |||||||    
T  31618755 tactaatgctagcaacttcatttatgaattcttctccatttccctttgtctcgcttattactttcactgccacttgacgactattatataaacttgcttt 31618854  T
Q  208 gta 210  Q
    |||    
T  31618855 gta 31618857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 31585799 - 31585979
Alignment:
Q  12 ccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttctact 111  Q
    |||||||||||| || |||||| |||||||| | ||||||||||||| ||||||| ||| |||||| ||| || |||||||| |||||||||||||||||    
T  31585799 ccaatgatcctttggacatgaattcatatatcaatgctcttttgttcacctcatagcaaaagcctaaaagtgatacaatgttgatgtgtgatgttctact 31585898  T
Q  112 aatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatc 192  Q
    |||||||| ||||||||||||||||||||| |||||||| || | ||| |||||||||||||| ||||| |||||||||||    
T  31585899 aatgctagaaacttcatttatgaattcttctccatttcccttagtttcatttattactttcaccgccacatgacgaccatc 31585979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31541407 - 31541606
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||   ||||||||| | || | ||| || ||||||||||  ||||||||||    
T  31541407 ttatccaatgatcctttgggcaagaactcatatattagtgctcttttgttc---tcataacaaaatcccaaaagtgagacaatgttcacatgtgatgttc 31541503  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || || || ||||| | ||||||||| |||||||||||||| | |||  |||||||    
T  31541504 tactaatgctagcaacttcatttatgaaatcttctccatttcccttagactcatttataattttcactgctacttgacgaccatcaggtaagtttgcttt 31541603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 31572666 - 31572485
Alignment:
Q  26 ggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttctactaatgctagcaactt 125  Q
    |||||||| ||||||||||||||||||||||||   ||||||||  | || | ||| || ||||||||||  ||||||||||||||||||||||||||||    
T  31572666 ggcatgaattcatatattagtgctcttttgttc---tcataacagaaacccaaaagtgagacaatgttcacatgtgatgttctactaatgctagcaactt 31572570  T
Q  126 catttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgctttgta 210  Q
    |||||||||||||||| |||| ||| || ||||||||||||||||| || |||||||||| |||||| | |||| ||||||||||    
T  31572569 catttatgaattcttctccatctcccttagattcgtttattactttaaccgccacttgacaaccatcaggtaaacttgctttgta 31572485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 33305014 - 33304810
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttca--tgtg---tga 102  Q
    |||||||||||||||| ||||||||| |||||||| || ||||||||||||   ||||||||| | || | ||| || ||||||||||  ||||   |||    
T  33305014 ttatccaatgatcctttgggcatgaattcatatatcagagctcttttgttc---tcataacaaaaacccaaaagtgagacaatgttcacatgtgacgtga 33304918  T
Q  103 tgttctactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaatt 202  Q
     ||||||||||||||||||||||||||||| |||||||| |||||||| || || || |||||||||||||||||||||||||||||||| | |||  ||    
T  33304917 cgttctactaatgctagcaacttcatttataaattcttctccatttcccttggactcttttattactttcactgccacttgacgaccatcaggtaagctt 33304818  T
Q  203 gctttgta 210  Q
    ||||||||    
T  33304817 gctttgta 33304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 31532750 - 31532949
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    ||||| |||||||||  || |||||| ||||||||||||||||||||||||   ||||| ||| | || | ||| || || |||||||  ||||||||||    
T  31532750 ttatctaatgatcctctggacatgaattcatatattagtgctcttttgttc---tcatagcaaaaacccaaaagtgaaacgatgttcacatgtgatgttc 31532846  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
    |||||||||| |||||||||||| |||||||||| | |||||| ||||| ||||||||||||||||| ||||||| ||||||||| | |||  |||||||    
T  31532847 tactaatgcttgcaacttcatttgtgaattcttctctatttccctttgactcgtttattactttcaccgccacttcacgaccatcaggtaagtttgcttt 31532946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 31438840 - 31438658
Alignment:
Q  28 catgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttctactaatgctagcaacttca 127  Q
    |||||| |||||||| | ||| |||||||||   ||||||||| | || | ||| || ||||||||||  ||||||||| |||| ||||| |||||||||    
T  31438840 catgaattcatatatcaatgcacttttgttcttttcataacaaaaacccaaaagtgagacaatgttcacatgtgatgttttacttatgcttgcaacttca 31438741  T
Q  128 tttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgctttgta 210  Q
    ||||| |||||||| || | ||| ||  | ||  ||||||||||||| || || ||||| ||||| | |||| ||||||||||    
T  31438740 tttataaattcttctccgtctcccttgcactcacttattactttcaccgcaacatgacggccatcaggtaaacttgctttgta 31438658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 32351742 - 32351855
Alignment:
Q  61 ctcataacaatagcctacaagggacacaatgttcatgtgtgatgttctactaatgctagcaacttcatttatgaattcttccccatttccttttgattcg 160  Q
    |||||||||| | || | ||| || ||||||||||  ||||| |||||| |||| ||| | |||||||||||||| ||||  |||| ||| ||||| ||     
T  32351742 ctcataacaaaaacccaaaagtgaaacaatgttcacatgtgaggttctagtaattctatctacttcatttatgaaatcttttccatctccctttgaatca 32351841  T
Q  161 tttattactttcac 174  Q
    ||||||| ||||||    
T  32351842 tttattattttcac 32351855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 52174152 - 52173949
Alignment:
Q  10 atccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttcta 109  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  52174152 atccaatgatccttggcgcatgaattcatatattagtgctcttttgttcacctcataacaatagcctaaaagtgacacaatgttcacgtgtgatgttcta 52174053  T
Q  110 ctaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgctttgt 209  Q
    |||||||||||||||||||||||||||||||| ||||  || ||| | |||||||||||||| || ||||||||||||||||| | |||| |||||||||    
T  52174052 ctaatgctagcaacttcatttatgaattcttctccatccccctttaactcgtttattactttaacagccacttgacgaccatcaggtaaacttgctttgt 52173953  T
Q  210 atac 213  Q
    ||||    
T  52173952 atac 52173949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 15063207 - 15063005
Alignment:
Q  8 ttatccaatgatccttggggcatgaactcatatattagtgctcttttgttcccctcataacaatagcctacaagggacacaatgttcatgtgtgatgttc 107  Q
    ||||| |||||||| | || |||||| |||||||| | |||||||||||||  |||||||||| | || | ||| || |||| |||||| |||||||||     
T  15063207 ttatctaatgatccattggacatgaattcatatatcaatgctcttttgttcttctcataacaaaaacccaaaagtgaaacaacgttcatatgtgatgttt 15063108  T
Q  108 tactaatgctagcaacttcatttatgaattcttccccatttccttttgattcgtttattactttcactgccacttgacgaccatcggataaaattgcttt 207  Q
    |  | ||||| |||||||||||||| |||||||| || ||||| ||  | ||| |||| |||||||| || || ||||| ||||| | |||| | |||||    
T  15063107 ttgttatgcttgcaacttcatttataaattcttctccgtttcccttgcactcgcttatcactttcaccgctacatgacggccatcaggtaaactggcttt 15063008  T
Q  208 gta 210  Q
    |||    
T  15063007 gta 15063005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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