View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4534_high_14 (Length: 306)
Name: NF4534_high_14
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 52725525 - 52725239
Alignment:
| Q |
14 |
ctggagatgaagggaataagttgcaagta-agaattaaaggatgagaaaacagtagataaatcatgagtgagaagagtatatttaccaacaatacattag |
112 |
Q |
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| T |
52725525 |
ctggaaatgaagggaataagttgcaagtagagaattaaaggatgagaaaacagtagataaatcatgagtgagaagggtatatttaccaacaatacattag |
52725426 |
T |
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| Q |
113 |
ttagtaaatctcatgagagttgaaagtaaattggagaaagaatgaa--tgtttaggaactaaattgatccttgattaaatgaacagtaaaaatat-aaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || | | | |||| ||| | | |||||||||||||||||||||| |||| |
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| T |
52725425 |
ttagtaaatctcatgagagttgaaagtaaattggagaaagaatgaaattgatcattgattaaa-tgaacatgaattaaatgaacagtaaaaatataaaaa |
52725327 |
T |
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| Q |
210 |
aagagtgttaaaggaaggaagaaagaaagacagacatcgaacgagtctgtaagcatccctcttgtattcatcttgctcatttaggtccatatcaaa |
305 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725326 |
aagagtgttaaagg--------aagaaagacagacatcgaacgagtctgtaagcatccctcttgtattcatcttgctcatttaggtccatatcaaa |
52725239 |
T |
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