View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4534_high_2 (Length: 416)
Name: NF4534_high_2
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 262 - 416
Target Start/End: Complemental strand, 41383696 - 41383544
Alignment:
| Q |
262 |
gaggtgtaagtaatcatatattgcaattcaaaaccaaaaagagcatgataatatgagcgtaataatcaaaataggcatatatatatgtgtttaggaaatt |
361 |
Q |
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| T |
41383696 |
gaggtgtaagtaatcatatattgcaattcaaaaccaaaaagagcatgataatatgagcgtaataatcaaaataggcatat--atatgtgtttaggaaatt |
41383599 |
T |
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| Q |
362 |
ttgaatttgatgtagttggctagatcgtatatatagaagcttcggatttcaatat |
416 |
Q |
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| T |
41383598 |
ttgaatttgatgtagttggctagatcgtatatatagaagcttcggatttcaatat |
41383544 |
T |
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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34856818 - 34856703
Alignment:
| Q |
1 |
gggattagcattccagttataaattatcctacaagtttctgattgggaatctggcacggtggagtattttttgattgtaatactgcattctatattgttc |
100 |
Q |
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| T |
34856818 |
gggattagcattccagttataaattatcctacaagtttctgattgggaatctggcacggtggagtatttattgattgtaatactgcattctatattgttc |
34856719 |
T |
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| Q |
101 |
atcattgtagccactg |
116 |
Q |
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| T |
34856718 |
atcattgtagccactg |
34856703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 415
Target Start/End: Original strand, 8040302 - 8040452
Alignment:
| Q |
262 |
gaggtgtaagtaatcatatattgcaattcaaaaccaaaaagagcatgataat---atgagcgtaataatcaaaataggcatatatatatgtgtttaggaa |
358 |
Q |
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| T |
8040302 |
gaggtgtaagtagtcatatatttcaattcaaaacaaaaaatagaatgatgatcctatgcgaggaataatcaaaataggcatattt----gtgtttaggaa |
8040397 |
T |
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| Q |
359 |
attttgaatttgatgtagttggctagatcgtatatatagaagcttcggatttcaata |
415 |
Q |
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| T |
8040398 |
attttgaatttgatgaagttgtctatatcg--tatatagaagcttcggatttcaata |
8040452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 409
Target Start/End: Complemental strand, 7973570 - 7973478
Alignment:
| Q |
322 |
aataatcaaaataggcatatatatatgtgtttaggaaattttgaatttgatgtagttggctagatcgta-----tatatagaagcttcggatt |
409 |
Q |
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| T |
7973570 |
aataatcaaaataggcatatatacatgtggttaggaaattttgaatttgatgaagttgtgtatatcgtatatcgtatatagaagcttcggatt |
7973478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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