View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4534_high_5 (Length: 353)
Name: NF4534_high_5
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534_high_5 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0122 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 353
Target Start/End: Original strand, 40811854 - 40812196
Alignment:
| Q |
12 |
cataggccttatctgaatccatttctttcaagtctcaaaaaatcccatactagagaaatgtgttaactaaaagtcgttatcatttgatgagattcgagaa |
111 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40811854 |
cataagccttatatgaatccatttctttcaaatctcaaaaaatcccatactagagaaatgtgttaaccaaaagtcgttatcatttgatgagattcaagaa |
40811953 |
T |
|
| Q |
112 |
ccaatagcctccaaacacaggaacataatcactagttttgtgagcaaacaactcgtcaaaatacttgtgtgccttttgttggaggagtaaaaga-cctcc |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40811954 |
ccaatagcctccaaacacatgaacataatcactagttttgtgagcaaacaactcgtcaaaatacttgtgtgccttttgttggaggagtaaaagaccctcc |
40812053 |
T |
|
| Q |
211 |
ataactattcctccgtcatcttgtaaccgtgataatttgttcggcttcgatctgcacgtatgtgaggcgtgaaaaaattatgtcttgagatgtttaaact |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40812054 |
ataactattcctccatcatcttgtaaccgtggtaatttgttcggcttcgatcagcacgtatgtgaggcgtgaaaaaattatgtcttgagatgtttaaact |
40812153 |
T |
|
| Q |
311 |
catttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40812154 |
catttttcccttttaatccggtccaaatctgctccccaacaac |
40812196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 2972258 - 2972230
Alignment:
| Q |
325 |
aatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2972258 |
aatccggtccaaatctgctccccaacaac |
2972230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 25020350 - 25020638
Alignment:
| Q |
17 |
gccttatctgaatccatttctttcaagtctcaaaaaatcccatactagagaaatgtgttaactaaaagtcgttatcatttgatgagattcgagaaccaat |
116 |
Q |
| |
|
||||||||||||||| ||| ||||||| || |||||||| | ||||||||||||||| | || |||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
25020350 |
gccttatctgaatccgtttgtttcaagcctaaaaaaatcttaaactagagaaatgtgtcacctgaaagtcattatcatttgatgagattcaagaatcaat |
25020449 |
T |
|
| Q |
117 |
agcctccaaacacaggaacataatcactagttttgtgagcaaacaactcgtcaaaatacttgtgtgcctttt-----gttggaggagtaaaaga-cctcc |
210 |
Q |
| |
|
| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||||| |
|
|
| T |
25020450 |
a-actcttaacacaggaac--aagcactagttttgtgagcaaacaactcgtcaaaatacttgtgttcctttttttggattggaggaggaagagaccctcc |
25020546 |
T |
|
| Q |
211 |
ataactattcctccgtcatcttgtaaccgtgataatttgttcggcttcgatctgcacgtatgtgaggcgtgaaaaaattatgtcttgagatg |
302 |
Q |
| |
|
| ||||||| |||| || || ||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25020547 |
acaactatttctccatcgtcatgtcaccgtgataatttgttcgcctttgatctgcacgtatgtgaggcatgaaaaaattatgtcttgagatg |
25020638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 12061224 - 12061173
Alignment:
| Q |
302 |
gtttaaactcatttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12061224 |
gtttaaacccatttttcccttttaacccggtccaaatctgctccccaacaac |
12061173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 23560679 - 23560719
Alignment:
| Q |
309 |
ctcatttttcccttttaatccggtccaaatctgctccccaa |
349 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23560679 |
ctcatttttcccttttaatccggtctaaatcagctccccaa |
23560719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 8096089 - 8096140
Alignment:
| Q |
302 |
gtttaaactcatttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8096089 |
gtttaaacccatttttcccttttaacccggtccaaatctgctccccaacaac |
8096140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 13366289 - 13366247
Alignment:
| Q |
311 |
catttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13366289 |
catttttcccttttaatccggtccaaatctgctccccaacaac |
13366247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 16775 - 16817
Alignment:
| Q |
311 |
catttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16775 |
catttttcccttttaatccggttcaaatctgctccccaacaac |
16817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 14510069 - 14510111
Alignment:
| Q |
311 |
catttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14510069 |
catttttcccttttaatctggtccaaatctgctccccaacaac |
14510111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 14326691 - 14326650
Alignment:
| Q |
312 |
atttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14326691 |
atttttcccttttaatccggtccaaatccgctccccaacaac |
14326650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 14419701 - 14419660
Alignment:
| Q |
312 |
atttttcccttttaatccggtccaaatctgctccccaacaac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14419701 |
atttttcccttttaatccggtccaaatccgctccccaacaac |
14419660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University