View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4534_high_6 (Length: 350)
Name: NF4534_high_6
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 47729054 - 47728716
Alignment:
| Q |
3 |
cttttaaggctaagcaccctaacgaggcacacatatttttccttccttttagtgttgcaaatgtggttcaatatgtttataagccaattatgtccaaaaa |
102 |
Q |
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| T |
47729054 |
cttttaaggctaagcaccctaatgaggcacacatatttttccttccttttagtgttgcaaatgtggttcaatatgtttataagccaattatgtccaaaaa |
47728955 |
T |
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| Q |
103 |
ggatttcaaccgtgacagacttcatagaatggtggaggattatgtaaatgttgtggctcataagtatccttattggaatagaagcaatggtgctgaccat |
202 |
Q |
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| T |
47728954 |
ggatttcaaccgtgacagacttcatagaatggtggaggattatgtaaatgttgtggctcataagtatccttattggaatagaagcaatggtgctgaccat |
47728855 |
T |
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| Q |
203 |
tttctcctctcttgtcatgactgggtaattttcttct--cacttcatttgattaattactaggaacttcaacatgctgaggtttattattgtttttccat |
300 |
Q |
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| T |
47728854 |
tttctcctctcttgtcatgactgggtaattttcttctcacacttcatttgattaattactaggaacttaaacatgctgaggtttattattgtttttccat |
47728755 |
T |
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| Q |
301 |
aatatgcatgtatgcaatgtctagtgtctataactctgc |
339 |
Q |
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| T |
47728754 |
aatatgcatgtatgcaatgtctagtgtctataactctgc |
47728716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 263600 - 263535
Alignment:
| Q |
164 |
aagtatccttattggaatagaagcaatggtgctgaccattttctcctctcttgtcatgactgggta |
229 |
Q |
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| T |
263600 |
aagtatccttattggaacagaagccaaggtgctgaccattttctactttcatgccatgattgggta |
263535 |
T |
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