View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4534_high_7 (Length: 347)

Name: NF4534_high_7
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4534_high_7
NF4534_high_7
[»] chr1 (1 HSPs)
chr1 (4-347)||(46810927-46811267)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 46810927 - 46811267
Alignment:
Q  4 tatatgaacaatcaatattaacaattacaaccaatttgttatgtctccttcgccacatcgtataatttattcggctgaaagctcaactgatctttttcaa 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  46810927 tatatgaacaatcaatagtaacaattacaaccaatttgttatgtctccttcgccacatcgtataatttgttcggctgaaagcccaactgatctttttcaa 46811026  T
Q  104 agatcaaactaaactcaatttaattaaagatagattatcaattggttacctattttcaattttagattaattaatcatatttccgagcttcaactcaatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  46811027 agatcaaactaaactcaatttaattaaagatagattatcaattggttacctatttccaattttagattaattaatcatatttcccagcttcaactcaatt 46811126  T
Q  204 atgttgtaacctataactaatcatacattgatcaagcataatcatacactcaaactgaaacaataattaaatgtgaagagaaaaaagacattgaatgact 303  Q
    |   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46811127 a---tgaaacctataactaatcatacattgatcaagcataatcatacactcaaactgaaacaataattaaatgtgaagagaaaaaagacattgaatgact 46811223  T
Q  304 agaaccactatagaggcagggggctgtgatttgtgtgagtaaag 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46811224 agaaccactatagaggcagggggctgtgatttgtgtgagtaaag 46811267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University