View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4534_high_9 (Length: 322)

Name: NF4534_high_9
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4534_high_9
NF4534_high_9
[»] chr4 (1 HSPs)
chr4 (29-322)||(32726168-32726461)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 32726168 - 32726461
Alignment:
Q  29 cacacacccatatatataacatgatggatgcattgattagaagacatgtatgtataaacactgttattttcctcattatggaccatactaagtgttgtgc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726168 cacacacccatatatataacatgatggatgcattgattagaagacatgtatgtataaacactgttattttcctcattatggaccatactaagtgttgtgc 32726267  T
Q  129 gacttctttgaatattcccttaattatgtagattattcattatgaaaggtgttattattttacctatgacataaatggagtcacagtagttaatgtcgtt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32726268 gacttctttgaatattcccttaattatgtagattattcattatgaaaggtgttattattttacctatgacataaatggagtcacagtagttagtgtcgtt 32726367  T
Q  229 gggaacccaggctgcttctgtgtatgcgaatggagatgatgactcaatatttggaattagttagtctaggagtcgggtatcatggagttaaaat 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726368 gggaacccaggctgcttctgtgtatgcgaatggagatgatgactcaatatttggaattagttagtctaggagtcgggtatcatggagttaaaat 32726461  T

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