View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4534_low_1 (Length: 497)
Name: NF4534_low_1
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 47456550 - 47457026
Alignment:
| Q |
1 |
gagaagataaacgagagactgagaactctgcagaatcttgtaccaaatggaacaaaggtaacttatttttgcatgaatgtttttcagtttaaaggggctt |
100 |
Q |
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| T |
47456550 |
gagaagataaacgagagactgagaactctgcagaatcttgtaccaaatggaacaaaggtaacttatttttgcatgaatgtttttcagtttaaaggggctt |
47456649 |
T |
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| Q |
101 |
gtaactatttgagagatgtataatttcatatatgggatggtcatacaggttgatataagcacaatgcttgaagatgcaatccaatatgtgaaatttctgc |
200 |
Q |
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| T |
47456650 |
gtaactatttgagagatgtataatttcacatatgggatggtcatacaggttgatataagcacaatgcttgaagatgcaatccaatatgtgaaatttctgc |
47456749 |
T |
|
| Q |
201 |
agctccaaatcaaggtaatatatgagtcgcgaaatatagacgattaataattagtttctgtttagaaatatcaaggtgtgtgtatatgttcaatcagaat |
300 |
Q |
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| T |
47456750 |
agctccaaatcaaggtaatatatgagtcgcgaaatatagacgattaataattagtttctgtttagaaatatcaaggtgtgtgtatatgttcaatcagaat |
47456849 |
T |
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| Q |
301 |
aacatctttttaatatgaatgtttatttcttatatagcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattgga |
400 |
Q |
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| T |
47456850 |
aacatctttttaatatgaatgtttatttcttatatagcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattgga |
47456949 |
T |
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| Q |
401 |
ttcaatctcaacaggaagatttctccaccaccatgaacttaaaatgaaacctgtttatgagtgatattagatttaag |
477 |
Q |
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| T |
47456950 |
ttcaatctcaacaggaagatttctccaccaccatgaacttaaaatgaaacctgtttatgagtgatattagatttaag |
47457026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 412
Target Start/End: Complemental strand, 5272095 - 5272013
Alignment:
| Q |
330 |
ttatatagcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggattcaatctcaac |
412 |
Q |
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| T |
5272095 |
ttatgtagcttttgagctctgatgatatgtggatgtatgcaccacttgcttacaatggacttgaccttggactcaatctcaac |
5272013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 48145680 - 48145614
Alignment:
| Q |
336 |
agcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggatt |
402 |
Q |
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| T |
48145680 |
agcttttaagctctgaagatatgtggatgtatgctccaattgcttacaatggaatgaacattggatt |
48145614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 48140724 - 48140647
Alignment:
| Q |
336 |
agcttctaagctctgatgatctgtggatgtatgctccaattgcttataatggacttgacattggattcaatctcaaca |
413 |
Q |
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| T |
48140724 |
agcttctgagctctgatgatcactggatgtatgctccaattgcttacaatggaatgaacattggactaaacctcaaca |
48140647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 48150519 - 48150474
Alignment:
| Q |
357 |
tgtggatgtatgctccaattgcttataatggacttgacattggatt |
402 |
Q |
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| T |
48150519 |
tgtggatgtatgctccaattgcttacaatggaatgaacattggatt |
48150474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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