View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4534_low_2 (Length: 433)
Name: NF4534_low_2
Description: NF4534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4534_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 262684 - 262279
Alignment:
| Q |
15 |
agatgaagttgcaaaatgttcgtctcaggtcatggaaaatatgtgtaacaaccaagttccttaacaatcaaagtaatttaaaatacaagtcttcaaaatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
262684 |
agatgaagttgcaaaatgttcgtctcaggtcatggaaaatatgtgtaacaaccaagttcctcaacaatcaaagtaatttaaaatacaagtcttcaaaatt |
262585 |
T |
|
| Q |
115 |
gaatcaagacattatattaaaataagtgacatgtttttacataaagcnnnnnnnngtgaaacttaaatacaacttagaaccctaaactctagactcttgt |
214 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
262584 |
gaattaagacattatattaaaataagtgacatgtttttacataaagtaaaaaaaagtgaaacttaaatacaacttagaaccctaaactctagactcttgt |
262485 |
T |
|
| Q |
215 |
gatccggctccgattaacttcaaacagcttatacctctaattctatgttggagatggagattcaagcttcaatcaatctttcctttcttctaacttaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
262484 |
gatccggctccgattaacttcaaacagcttatacctctaattctatgttggagatggagattcaagcttcaatcaatctttcctttcttctaacttaatt |
262385 |
T |
|
| Q |
315 |
gatttcttgatttctttccaattctcaatcttcactccatgaaccttaatcttcaacattcttctatcttcaatctagtttctctaggtttcccattaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
262384 |
gatttcttgatttctttccaattctcaatcttcaatccatgaaccctaatcttcaacattcttctatcttcaatctagtttctctaggtttcccattaca |
262285 |
T |
|
| Q |
415 |
ttagaa |
420 |
Q |
| |
|
|||||| |
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|
| T |
262284 |
ttagaa |
262279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 653237 - 653642
Alignment:
| Q |
15 |
agatgaagttgcaaaatgttcgtctcaggtcatggaaaatatgtgtaacaaccaagttccttaacaatcaaagtaatttaaaatacaagtcttcaaaatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
653237 |
agatgaagttgcaaaatgttcgtctcaggtcatggaaaatatgtgtaacaaccaagttcctcaacaatcaaagtaatttaaaatacaagtcttcaaaatt |
653336 |
T |
|
| Q |
115 |
gaatcaagacattatattaaaataagtgacatgtttttacataaagcnnnnnnnngtgaaacttaaatacaacttagaaccctaaactctagactcttgt |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
653337 |
gaattaagacattatattaaaataagtgacatgtttttacataaagtaaaaaaaagtgaaacttaaatacaacttagaaccctaaactctagactcttgt |
653436 |
T |
|
| Q |
215 |
gatccggctccgattaacttcaaacagcttatacctctaattctatgttggagatggagattcaagcttcaatcaatctttcctttcttctaacttaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
653437 |
gatccggctccgattaacttcaaacagcttatacctctaattctatgttggagatggagattcaagcttcaatcaatctttcctttcttctaacttaatt |
653536 |
T |
|
| Q |
315 |
gatttcttgatttctttccaattctcaatcttcactccatgaaccttaatcttcaacattcttctatcttcaatctagtttctctaggtttcccattaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
653537 |
gatttcttgatttctttccaattctcaatcttcaatccatgaaccctaatcttcaacattcttctatcttcaatctagtttctctaggtttcccattaca |
653636 |
T |
|
| Q |
415 |
ttagaa |
420 |
Q |
| |
|
|||||| |
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|
| T |
653637 |
ttagaa |
653642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 838972 - 839377
Alignment:
| Q |
15 |
agatgaagttgcaaaatgttcgtctcaggtcatggaaaatatgtgtaacaaccaagttccttaacaatcaaagtaatttaaaatacaagtcttcaaaatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
838972 |
agatgaagttgcaaaatgttcgtctcaggtcatggaaaatatgtgtaacaaccaagttcctcaacaatcaaagtaatttaaaatacaagtcttcaaaatt |
839071 |
T |
|
| Q |
115 |
gaatcaagacattatattaaaataagtgacatgtttttacataaagcnnnnnnnngtgaaacttaaatacaacttagaaccctaaactctagactcttgt |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
839072 |
gaattaagacattatattaaaataagtgacatgtttttacataaagtaaaaaaaagtgaaacttaaatacaacttagaaccctaaactctagactcttgt |
839171 |
T |
|
| Q |
215 |
gatccggctccgattaacttcaaacagcttatacctctaattctatgttggagatggagattcaagcttcaatcaatctttcctttcttctaacttaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
839172 |
gatccggctccgattaacttcaaacagcttatacctctaattctatgttggagatggagattcaagcttcaatcaatctttcctttcttctaacttaatt |
839271 |
T |
|
| Q |
315 |
gatttcttgatttctttccaattctcaatcttcactccatgaaccttaatcttcaacattcttctatcttcaatctagtttctctaggtttcccattaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
839272 |
gatttcttgatttctttccaattctcaatcttcaatccatgaaccctaatcttcaacattcttctatcttcaatctagtttctctaggtttcccattaca |
839371 |
T |
|
| Q |
415 |
ttagaa |
420 |
Q |
| |
|
|||||| |
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|
| T |
839372 |
ttagaa |
839377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 23856330 - 23856280
Alignment:
| Q |
199 |
aactctagactcttgtgatccggctccgattaacttcaaacagcttatacct |
250 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
23856330 |
aactctagacact-gtgatccgactccgattaacttcaaacagcttatacct |
23856280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 5681266 - 5681375
Alignment:
| Q |
106 |
ttcaaaattgaatcaagacattatattaaaataagtgacatgtttttacataaagc-nnnnnnnngtgaaacttaaatacaacttagaaccctaaactct |
204 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
5681266 |
ttcaaaattgaattaagacattatattaaaataagtgacatgtttttacataaagcaaaagaaaaaataaacttaaatacaactgagaaccctaaactct |
5681365 |
T |
|
| Q |
205 |
agactcttgt |
214 |
Q |
| |
|
|||||||||| |
|
|
| T |
5681366 |
agactcttgt |
5681375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 19210592 - 19210529
Alignment:
| Q |
342 |
atcttcactccatgaaccttaatcttcaacattcttctatcttcaatcta-gtttctctaggttt |
405 |
Q |
| |
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|||||||||||||||||| || ||| || |||||||||||||||||||| ||||||||||||| |
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|
| T |
19210592 |
atcttcactccatgaaccc-aaccttaaatattcttctatcttcaatctacttttctctaggttt |
19210529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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