View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4535-Insertion-1 (Length: 975)
Name: NF4535-Insertion-1
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-1 |
 | |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 912; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 912; E-Value: 0
Query Start/End: Original strand, 8 - 975
Target Start/End: Complemental strand, 37163435 - 37162469
Alignment:
| Q |
8 |
tactagtgatgctagcaagaaaatgaagaatattttaacaacttcaatgcatatgagtagcaatgcacttgctgtcatttcagatttggcagataatgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37163435 |
tactagtgatgctagcaagaaaatgaagaatattttaacaacttcaatgcatatgagtagcaatgcacttgctgtcatttcagatttggcagataatgtt |
37163336 |
T |
|
| Q |
108 |
ttggatttgaacgcgacaacagatggacgtcgacttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37163335 |
ttggatttgaacgcgacaacagatggacgtcgtcttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatg |
37163236 |
T |
|
| Q |
208 |
ttccttcttgggttggtgatggtttaagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163235 |
ttccttcttgggttggtgatggtttaagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatgg |
37163136 |
T |
|
| Q |
308 |
tagtggaaagttcaagaaaatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgag |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37163135 |
tagtggaaagtttaagaaaatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgag |
37163036 |
T |
|
| Q |
408 |
tatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaatta |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37163035 |
tatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaatta |
37162936 |
T |
|
| Q |
508 |
acacttaccaaacccccactgtcggtacgtgttttagagacgaatttcacatttttctttccttaacatgtcgctatttcagctttttctatgtacaaaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37162935 |
acacttaccaaacccccactgtcggtacgtgttttagagacgaatttcacaattttctttccttaacatgtcgctatttcagctttttctatgtacaaaa |
37162836 |
T |
|
| Q |
608 |
ctatacatgggaagcaactataaataaatcaacttaaaaaccagtatgcatggttaataagagatatagtattatgggaattaagtaagaatatgnnnnn |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37162835 |
ctatacatgggaagcaactataaataaatcaacttaaaaaccagtatgcatggttaataagagatatagtattatgggaattaagtaagaatatgttttt |
37162736 |
T |
|
| Q |
708 |
nngatcaaagaagaacaatatgttaattgcaaaatatattgatgtttatgcctacatattgcagctattgaaggagataactttgtagccatcaatatag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37162735 |
ttgatcaaagaagaacaatatgttaattgcaaaatatattgatgtttatgcctacatattgcagctattgaaggagataactttgtagccatcaatatag |
37162636 |
T |
|
| Q |
808 |
gattcggagaattcagctggacctcaaaaacatcaagcagtagcgataagggt-caagcagacaaggcaatcttttacaaatgttcaatggacggatatc |
906 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162635 |
gattc-gagaattcagctggacctcaaaaacatcaagcagtagcgataagggtccaagcagacaaggcaatcttttacaaatgttcaatggacggatatc |
37162537 |
T |
|
| Q |
907 |
aagacacattatatgtacacaccatgcgtcaattttatcgtgaattgtacaatttcaggcaccattgac |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
37162536 |
aagacacattatatgtacacaccatgcgtcaattttatcgtg-attgtacaatttcaggcaccattgac |
37162469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 814 - 971
Target Start/End: Complemental strand, 37154886 - 37154729
Alignment:
| Q |
814 |
gagaattcagctggacctcaaaaacatcaagcagtagcgataagggt-caagcagacaaggcaatcttttacaaatgttcaatggacggatatcaagaca |
912 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| || |||| || |||| ||| ||| | ||||| | ||| || |||||||| ||||||||||||| |
|
|
| T |
37154886 |
gagaattcagctggtccacaaaaacatcaagcagtggcactaagagttcaaggagataagactatcttcttcaattgctcaatggatggatatcaagaca |
37154787 |
T |
|
| Q |
913 |
cattatatgtacacaccatgcgtcaattttatcgtgaattgtacaatttcaggcaccat |
971 |
Q |
| |
|
|| | ||||||||| |||||||||||||||| |||| | ||||| |||||||| ||||| |
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|
| T |
37154786 |
cactttatgtacacgccatgcgtcaattttaccgtg-actgtactatttcaggtaccat |
37154729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 765 - 949
Target Start/End: Original strand, 37150443 - 37150627
Alignment:
| Q |
765 |
attgcagctattgaaggagataactttgtagccatcaatataggattcggagaattcagctggacctcaaaaacatcaagcagtagcgataagggt-caa |
863 |
Q |
| |
|
|||||||| ||| |||||||| ||||| ||||| || || || |||| |||| |||||||| || ||||||||||||||||| || |||| || ||| |
|
|
| T |
37150443 |
attgcagcaattcaaggagatcactttaccgccattaacatgggtttcg-agaactcagctggtccacaaaaacatcaagcagtggcactaagagttcaa |
37150541 |
T |
|
| Q |
864 |
gcagacaaggcaatcttttacaaatgttcaatggacggatatcaagacacattatatgtacacaccatgcgtcaattttatcgtga |
949 |
Q |
| |
|
| ||| ||||| ||||| ||||| || |||||||| ||||||||||||||| | ||||||||| ||||||||||||| || ||||| |
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|
| T |
37150542 |
ggagataaggctatcttctacaattgctcaatggatggatatcaagacacactttatgtacacgccatgcgtcaattctaccgtga |
37150627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 765 - 949
Target Start/End: Original strand, 37159268 - 37159452
Alignment:
| Q |
765 |
attgcagctattgaaggagataactttgtagccatcaatataggattcggagaattcagctggacctcaaaaacatcaagcagtagcgataagggt-caa |
863 |
Q |
| |
|
|||||||| ||| |||||||| ||||| ||||| || || || |||| |||| |||||||| || ||||||||||||||||| || |||| || ||| |
|
|
| T |
37159268 |
attgcagcaattcaaggagatcactttaccgccattaacatgggtttcg-agaactcagctggtccacaaaaacatcaagcagtggcactaagagttcaa |
37159366 |
T |
|
| Q |
864 |
gcagacaaggcaatcttttacaaatgttcaatggacggatatcaagacacattatatgtacacaccatgcgtcaattttatcgtga |
949 |
Q |
| |
|
| ||| ||||| ||||| ||||| || |||||||| ||||||||||||||| | ||||||||| ||||||||||||| || ||||| |
|
|
| T |
37159367 |
ggagataaggctatcttctacaattgctcaatggatggatatcaagacacactttatgtacacgccatgcgtcaattctaccgtga |
37159452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 405 - 534
Target Start/End: Original strand, 37150213 - 37150342
Alignment:
| Q |
405 |
gagtatgttgaagttactaagaaa-atgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatgga |
503 |
Q |
| |
|
||||||||||||||| ||| ||| ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| || ||||||||||| ||||| |||||| |
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|
| T |
37150213 |
gagtatgttgaagttt-taacaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcaccggcaacaaaaactttatggatgga |
37150311 |
T |
|
| Q |
504 |
attaacacttaccaaacccccactgtcggta |
534 |
Q |
| |
|
||| |||||||| ||| ||||||| |||| |
|
|
| T |
37150312 |
gttacgacttaccacaccgccactgttggta |
37150342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 405 - 534
Target Start/End: Original strand, 37159038 - 37159167
Alignment:
| Q |
405 |
gagtatgttgaagttactaagaaa-atgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatgga |
503 |
Q |
| |
|
||||||||||||||| ||| ||| ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| || ||||||||||| ||||| |||||| |
|
|
| T |
37159038 |
gagtatgttgaagttt-taacaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcaccggcaacaaaaactttatggatgga |
37159136 |
T |
|
| Q |
504 |
attaacacttaccaaacccccactgtcggta |
534 |
Q |
| |
|
||| |||||||| ||| ||||||| |||| |
|
|
| T |
37159137 |
gttacgacttaccacaccgccactgttggta |
37159167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 534
Target Start/End: Complemental strand, 37155327 - 37155198
Alignment:
| Q |
405 |
gagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaa |
504 |
Q |
| |
|
||||||||||||||| || || ||||| ||| |||||||| | ||||||||||| || ||| | | ||| |||||||||||||| | ||| |||||| |
|
|
| T |
37155327 |
gagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcgataatcactggcaacaaaaactatatggatggag |
37155228 |
T |
|
| Q |
505 |
ttaacacttaccaaacccccactgtcggta |
534 |
Q |
| |
|
||| ||| ||||| ||| ||||||| |||| |
|
|
| T |
37155227 |
ttaccacctaccataccaccactgttggta |
37155198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 765 - 943
Target Start/End: Complemental strand, 92026 - 91848
Alignment:
| Q |
765 |
attgcagctattgaaggagataactttgtagccatcaatataggattcggagaattcagctggacctcaaaaacatcaagcagtagcgataagggt-caa |
863 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| ||||| || || | ||||||||||||| || ||||||||||||||||| || |||| || ||| |
|
|
| T |
92026 |
attgcagctattcaaggagatcactttaccgccattaatatgggttttg-agaattcagctggtccacaaaaacatcaagcagtggcactaagagttcaa |
91928 |
T |
|
| Q |
864 |
gcagacaaggcaatcttttacaaatgttcaatggacggatatcaagacacattatatgtacacaccatgcgtcaatttta |
943 |
Q |
| |
|
| ||| ||||| ||||| | ||| || |||||||| ||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
91927 |
ggagataaggctatcttcttcaattgctcaatggatggatatcaagacacactttatgtacacgccatgcgtcaatttta |
91848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 814 - 943
Target Start/End: Complemental strand, 95285 - 95155
Alignment:
| Q |
814 |
gagaattcagctggacctcaaaaacatcaagcagtagcgataagggt-caagcagacaaggcaatcttttacaaatgttcaatggacggatatcaagaca |
912 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| || |||| || |||| ||| ||||| ||||| | ||| || |||||||| ||||||||||||| |
|
|
| T |
95285 |
gagaattcagctggtccacaaaaacatcaagcagtggcactaagagttcaaggagataaggctatcttcttcaattgctcaatggatggatatcaagaca |
95186 |
T |
|
| Q |
913 |
cattatatgtacacaccatgcgtcaatttta |
943 |
Q |
| |
|
|| | ||||||||| |||||||||||||||| |
|
|
| T |
95185 |
cactttatgtacacgccatgcgtcaatttta |
95155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 534
Target Start/End: Complemental strand, 95583 - 95436
Alignment:
| Q |
387 |
aaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaaca |
486 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| || || ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| |||||||||| |
|
|
| T |
95583 |
aaggaaggtgtttaccgagagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcactggcaaca |
95484 |
T |
|
| Q |
487 |
aaaattttatagatggaattaacacttaccaaacccccactgtcggta |
534 |
Q |
| |
|
|||| | ||| |||||| ||| ||| ||||| ||| ||||||| |||| |
|
|
| T |
95483 |
aaaactatatggatggagttaccacctaccataccaccactgttggta |
95436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 405 - 534
Target Start/End: Complemental strand, 92258 - 92129
Alignment:
| Q |
405 |
gagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaa |
504 |
Q |
| |
|
||||||||||||||| || || ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| |||||||||||||| | ||| |||||| |
|
|
| T |
92258 |
gagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcactggcaacaaaaactatatggatggag |
92159 |
T |
|
| Q |
505 |
ttaacacttaccaaacccccactgtcggta |
534 |
Q |
| |
|
||| ||| ||||| ||| ||||||| |||| |
|
|
| T |
92158 |
ttaccacctaccataccaccactgttggta |
92129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 280 - 503
Target Start/End: Original strand, 46315021 - 46315244
Alignment:
| Q |
280 |
aggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttat |
379 |
Q |
| |
|
||||| |||| ||||| ||||| ||||| |||||||| |||| | ||||| ||| ||| | || || ||||| ||||| ||| || || |||||||| |
|
|
| T |
46315021 |
aggctcatgttgttgttgctaaggatggaagtggaaatttcaccacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttat |
46315120 |
T |
|
| Q |
380 |
tcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattact |
479 |
Q |
| |
|
| | |||||||||||||||||| | |||||||||||||||||||| | |||||||| ||||| || | ||||||||||| | |||||| | ||||| |
|
|
| T |
46315121 |
ttacatcaaggagggtgtttataaagagtatgttgaagttactaaaaccatgactcacgttgttttcatcggtgatggtggtagaaagacacgcattacg |
46315220 |
T |
|
| Q |
480 |
ggcaacaaaaattttatagatgga |
503 |
Q |
| |
|
||||| ||||| || || |||||| |
|
|
| T |
46315221 |
ggcaataaaaacttcattgatgga |
46315244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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