View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4535-Insertion-11 (Length: 298)
Name: NF4535-Insertion-11
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 22364723 - 22365003
Alignment:
| Q |
6 |
cagatattactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
22364723 |
cagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggttcat |
22364822 |
T |
|
| Q |
106 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
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| T |
22364823 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggt |
22364922 |
T |
|
| Q |
206 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364923 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
22365003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 22134942 - 22135001
Alignment:
| Q |
224 |
gatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttca |
283 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| |||||||||||||||| |
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| T |
22134942 |
gatagtgattgggctggaagtgttgatgattccaagagcacttctggttatgttttttca |
22135001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 30048841 - 30049121
Alignment:
| Q |
6 |
cagatattactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcat |
105 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |
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|
| T |
30048841 |
cagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcat |
30048940 |
T |
|
| Q |
106 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
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| T |
30048941 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggt |
30049040 |
T |
|
| Q |
206 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30049041 |
aagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcactt |
30049121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 7161198 - 7161462
Alignment:
| Q |
6 |
cagatattactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| | |||||||||||||||| |
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|
| T |
7161198 |
cagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggttcat |
7161297 |
T |
|
| Q |
106 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7161298 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggt |
7161397 |
T |
|
| Q |
206 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
286 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161398 |
aagattgaa----------------attgggctggatcggttgatgattctaaaagcacaagtggttatgttttttcactt |
7161462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 286
Target Start/End: Complemental strand, 39950335 - 39950055
Alignment:
| Q |
6 |
cagatattactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |
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|
| T |
39950335 |
cagatgttactcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcat |
39950236 |
T |
|
| Q |
106 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
39950235 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggt |
39950136 |
T |
|
| Q |
206 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39950135 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
39950055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 35966481 - 35966452
Alignment:
| Q |
223 |
tgatagtgattgggctggatctgttgatga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35966481 |
tgatagtgattgggctggatctgttgatga |
35966452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 35987893 - 35987864
Alignment:
| Q |
223 |
tgatagtgattgggctggatctgttgatga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35987893 |
tgatagtgattgggctggatctgttgatga |
35987864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 43586298 - 43586327
Alignment:
| Q |
223 |
tgatagtgattgggctggatctgttgatga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43586298 |
tgatagtgattgggctggatctgttgatga |
43586327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 286
Target Start/End: Complemental strand, 197174 - 196894
Alignment:
| Q |
6 |
cagatattactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |
|
|
| T |
197174 |
cagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcat |
197075 |
T |
|
| Q |
106 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
197074 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatggt |
196975 |
T |
|
| Q |
206 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196974 |
aagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcactt |
196894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 3945095 - 3945375
Alignment:
| Q |
6 |
cagatattactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttggtgttctctgctaatctgctttcaaggttcat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |
|
|
| T |
3945095 |
cagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggttcat |
3945194 |
T |
|
| Q |
106 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagcgttgaggtacatatgatgtactattgattttggtatttggtacaacaaaggtgatggt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
3945195 |
gcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgatagt |
3945294 |
T |
|
| Q |
206 |
aagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcactt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945295 |
aagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcactt |
3945375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 26257436 - 26257465
Alignment:
| Q |
223 |
tgatagtgattgggctggatctgttgatga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26257436 |
tgatagtgattgggctggatctgttgatga |
26257465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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