View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4535-Insertion-12 (Length: 226)

Name: NF4535-Insertion-12
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4535-Insertion-12
NF4535-Insertion-12
[»] chr7 (13 HSPs)
chr7 (7-225)||(1418141-1418370)
chr7 (7-225)||(38225298-38225525)
chr7 (23-225)||(8376002-8376212)
chr7 (11-110)||(1417610-1417712)
chr7 (11-110)||(38225923-38226025)
chr7 (7-56)||(45099136-45099185)
chr7 (7-55)||(36378810-36378858)
chr7 (11-56)||(3029203-3029248)
chr7 (7-56)||(18977774-18977823)
chr7 (11-56)||(27948448-27948493)
chr7 (7-56)||(46428822-46428871)
chr7 (7-55)||(23889812-23889860)
chr7 (11-55)||(37395505-37395549)
[»] chr2 (18 HSPs)
chr2 (7-225)||(22301193-22301419)
chr2 (7-225)||(26752026-26752238)
chr2 (171-225)||(24120667-24120721)
chr2 (11-110)||(22301817-22301919)
chr2 (7-56)||(1296378-1296427)
chr2 (7-56)||(9276334-9276383)
chr2 (11-56)||(11751073-11751118)
chr2 (11-56)||(29559424-29559469)
chr2 (11-114)||(24120502-24120608)
chr2 (10-65)||(9540333-9540388)
chr2 (12-110)||(26752670-26752771)
chr2 (10-56)||(24933838-24933884)
chr2 (11-56)||(15774205-15774250)
chr2 (7-56)||(29512370-29512419)
chr2 (8-65)||(34812851-34812908)
chr2 (11-79)||(18174102-18174170)
chr2 (11-55)||(27177915-27177959)
chr2 (7-55)||(33512096-33512144)
[»] chr5 (9 HSPs)
chr5 (20-225)||(1553419-1553632)
chr5 (7-56)||(4084878-4084927)
chr5 (11-110)||(1554030-1554132)
chr5 (7-55)||(19360481-19360529)
chr5 (18-51)||(1283524-1283557)
chr5 (18-51)||(10554541-10554574)
chr5 (7-56)||(13306273-13306322)
chr5 (11-79)||(17071775-17071843)
chr5 (7-39)||(31081997-31082029)
[»] chr8 (19 HSPs)
chr8 (7-225)||(27441969-27442194)
chr8 (84-225)||(183318-183464)
chr8 (7-56)||(26652292-26652341)
chr8 (7-56)||(3417356-3417405)
chr8 (7-56)||(32979828-32979877)
chr8 (7-56)||(37064815-37064864)
chr8 (7-56)||(39778917-39778966)
chr8 (7-56)||(39779845-39779894)
chr8 (10-69)||(17725645-17725704)
chr8 (7-54)||(37732825-37732872)
chr8 (30-110)||(183893-183976)
chr8 (10-55)||(8372915-8372960)
chr8 (7-56)||(9197094-9197143)
chr8 (7-56)||(9197824-9197873)
chr8 (11-56)||(11686968-11687013)
chr8 (11-80)||(27441469-27441538)
chr8 (11-56)||(31602019-31602064)
chr8 (11-56)||(32414528-32414573)
chr8 (7-55)||(15198295-15198343)
[»] scaffold0085 (2 HSPs)
scaffold0085 (23-114)||(16590-16684)
scaffold0085 (150-196)||(16516-16562)
[»] chr1 (9 HSPs)
chr1 (7-56)||(37852521-37852570)
chr1 (7-65)||(25671168-25671226)
chr1 (11-56)||(12760778-12760823)
chr1 (11-56)||(28181535-28181580)
chr1 (7-56)||(30663981-30664030)
chr1 (11-56)||(36390372-36390417)
chr1 (11-56)||(4439211-4439256)
chr1 (11-56)||(13262835-13262880)
chr1 (11-55)||(17171933-17171977)
[»] chr3 (12 HSPs)
chr3 (47-196)||(982301-982457)
chr3 (42-108)||(35718410-35718479)
chr3 (170-225)||(35719038-35719093)
chr3 (7-56)||(10847290-10847339)
chr3 (7-69)||(33276891-33276953)
chr3 (7-56)||(14871152-14871201)
chr3 (7-56)||(33277509-33277558)
chr3 (7-65)||(13477056-13477114)
chr3 (7-65)||(37988214-37988272)
chr3 (7-56)||(20212979-20213028)
chr3 (7-56)||(44029774-44029823)
chr3 (8-56)||(37520566-37520614)
[»] chr6 (5 HSPs)
chr6 (7-56)||(8489284-8489333)
chr6 (7-55)||(20833972-20834020)
chr6 (10-56)||(19323771-19323817)
chr6 (10-55)||(2512439-2512484)
chr6 (7-79)||(19653968-19654040)
[»] chr4 (15 HSPs)
chr4 (7-56)||(598524-598573)
chr4 (7-65)||(31329713-31329771)
chr4 (7-56)||(44792641-44792690)
chr4 (7-56)||(47785804-47785853)
chr4 (10-56)||(40347556-40347602)
chr4 (11-56)||(599306-599351)
chr4 (7-56)||(8247695-8247744)
chr4 (11-56)||(11938714-11938759)
chr4 (18-51)||(16903668-16903701)
chr4 (10-55)||(19080387-19080432)
chr4 (7-56)||(24374788-24374837)
chr4 (11-56)||(26147037-26147082)
chr4 (7-56)||(44791723-44791772)
chr4 (19-56)||(56263077-56263114)
chr4 (11-79)||(47687912-47687980)
[»] scaffold1207 (1 HSPs)
scaffold1207 (10-56)||(1588-1634)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 1418370 - 1418141
Alignment:
Q  7 agtcaggatctgttgacacc---tggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaat 100  Q
    |||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  1418370 agtcaggatccgttgacaccaggtggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccaagcgtcctaattattgtgaaat 1418271  T
Q  101 taactcacgtgaacggttcagcacttgatccccccta-----cacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaa 195  Q
    |||||||||||||| ||||  ||||||||||||||||     |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1418270 taactcacgtgaaccgttctccacttgatcccccctaatctgcacactcacaccttctcctttgcgctaaccaccaaatcttgaaagaacaacaatgaaa 1418171  T
Q  196 gcttctttttcttatcaattatcacaaatc 225  Q
    ||||||||||||||||||||||| ||||||    
T  1418170 gcttctttttcttatcaattatctcaaatc 1418141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 38225298 - 38225525
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaa 103  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   | ||||||| |||||||||||    
T  38225298 agtcatgatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaa 38225397  T
Q  104 -ctcacgtgaacggttcagcacttgatccccccta-----cacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaagc 197  Q
     ||||||||||| ||||  ||||||||||||||||     ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38225398 actcacgtgaaccgttctccacttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaagc 38225497  T
Q  198 ttctttttcttatcaattatcacaaatc 225  Q
    ||||||||||||||||||||||||||||    
T  38225498 ttctttttcttatcaattatcacaaatc 38225525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 8376002 - 8376212
Alignment:
Q  23 cacctggtgtcaacgaatccgtta---acaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaactcacgtgaacgg 116  Q
    |||| ||||||||||||||| |||   |||| ||||| |||||||||| ||  |||||||| |   ||||||||||||| |||||||||||| |||||      
T  8376002 caccaggtgtcaacgaatccattattgacactaaatcttagccatttaatacatttaatccaagggtcctaattattgtaaaattaactcacatgaacct 8376101  T
Q  117 ttcagcacttgatccccc---ctacacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaagcttctttttcttatcaa 213  Q
    |||   |  ||||||||    || ||||||| | | |||||||  |||||||||  |||||||||||||||||||||| ||||  |||||||||||||||    
T  8376102 ttctcgatctgatcccctaatctgcacactc-ctctttctcctaagcgctaaccagcaaagcttgaaagaacaacaataaaagtgtctttttcttatcaa 8376200  T
Q  214 ttatcacaaatc 225  Q
    | ||| ||||||    
T  8376201 tgatctcaaatc 8376212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 1417610 - 1417712
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactca 107  Q
    |||||| ||||||||| ||||||||||||| |||| |||||||||| || ||||||| ||  ||||||||   | |||| |||| ||| |||||||||||    
T  1417610 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtcctgattaatgtaaaattaactca 1417709  T
Q  108 cgt 110  Q
    |||    
T  1417710 cgt 1417712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 38226025 - 38225923
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactca 107  Q
    |||||| ||||||||| ||||||||||||| |||| |||||||||| || ||||||| ||  ||||||||   | |||  |||||||| |||||||||||    
T  38226025 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtccagattattgtaaaattaactca 38225926  T
Q  108 cgt 110  Q
    |||    
T  38225925 cgt 38225923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 45099136 - 45099185
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||| | ||||||||||||| |||||||||||||||    
T  45099136 agtcaggatccgttgacatcaggtgtcaacgaattcgttaacaccaaatc 45099185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 36378810 - 36378858
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    ||||||||||||||||||||||||||| ||| || |||| |||||||||    
T  36378810 agtcaggatctgttgacacctggtgtcgacggattcgttgacaccaaat 36378858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 3029248 - 3029203
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 18977823 - 18977774
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||||||  |||||||| |||||||||| || |||||||||||||||    
T  18977823 agtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatc 18977774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 27948448 - 27948493
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  27948448 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 27948493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 46428871 - 46428822
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| ||||||||||||| |||| ||| ||||||    
T  46428871 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatc 46428822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 23889860 - 23889812
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    ||||| |||| |||| |||||||||||||||||| |||| |||||||||    
T  23889860 agtcaagatccgttggcacctggtgtcaacgaattcgttgacaccaaat 23889812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 37395549 - 37395505
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    |||||| ||||||||| |||||||||| || ||||||||||||||    
T  37395549 aggatccgttgacaccaggtgtcaacggattcgttaacaccaaat 37395505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 22301193 - 22301419
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaa 103  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   | ||||||| |||||||||||    
T  22301193 agtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaa 22301292  T
Q  104 ctcacgtgaacggttcagcacttgatccccccta-----cacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaagct 198  Q
    ||||||||||| ||||  ||||||||||||||||     ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22301293 ctcacgtgaaccgttctccacttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaagct 22301392  T
Q  199 tctttttcttatcaattatcacaaatc 225  Q
    |||||||||||||||||||||||||||    
T  22301393 tctttttcttatcaattatcacaaatc 22301419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 26752026 - 26752238
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaa 103  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||   | |||||||||||||||||||||    
T  26752026 agtcaggatccgttgacaccaggtgtcaacgaatccgttaacactaaatcgtagccatttattatgtttaatccaagggtcctaattattgtgaaattaa 26752125  T
Q  104 ctcacgtgaacggttcagcacttgatcccccctacacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaagcttcttt 203  Q
    ||||||||||| ||||  |||||||||||||||  |  |||||||||||||||||||||||||| ||       ||||||| ||||||||||||||||||    
T  26752126 ctcacgtgaaccgttctccacttgatcccccct--aatctcacaccttctcctttgcgctaaccacc-------gaaagaataacaatgaaagcttcttt 26752216  T
Q  204 ttcttatcaattatcacaaatc 225  Q
    ||||||||||||||| ||||||    
T  26752217 ttcttatcaattatctcaaatc 26752238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 24120667 - 24120721
Alignment:
Q  171 aaagcttgaaagaacaacaatgaaagcttctttttcttatcaattatcacaaatc 225  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||    
T  24120667 aaagcttgaaagaacaacaatgaaagtgtctttttcttatcaatgatctcaaatc 24120721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 22301919 - 22301817
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactca 107  Q
    |||||| ||||||||| ||||||||||||| |||| |||||||||| || ||||||| ||  ||||||||   | |||  |||||||| |||||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtcccgattattgtaaaattaactca 22301820  T
Q  108 cgt 110  Q
    |||    
T  22301819 cgt 22301817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 1296378 - 1296427
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  1296378 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 1296427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 9276383 - 9276334
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  9276383 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9276334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 11751118 - 11751073
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||    
T  11751118 aggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 11751073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 29559469 - 29559424
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||    
T  29559469 aggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatc 29559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 24120502 - 24120608
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactca 107  Q
    |||||||||||||||  ||||||||| ||||| || |||| ||||| |||||||||| ||  |||||| |   | |||||| |||||| |||||||||||    
T  24120502 aggatctgttgacactaggtgtcaaccaatccattgacactaaatcttagccatttaatacatttaattcaatggtcctaactattgtaaaattaactca 24120601  T
Q  108 cgtgaac 114  Q
    | |||||    
T  24120602 catgaac 24120608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 9540333 - 9540388
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatt 65  Q
    ||||||| ||||||||| ||||||||||||| |||| |||||||||| || |||||    
T  9540333 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatt 9540388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 26752771 - 26752670
Alignment:
Q  12 ggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactcac 108  Q
    ||||| ||||||||| ||||||||||||| |||| ||| |||||| || ||||||| ||  ||||||||   | |||| |||| ||| ||||||||||||    
T  26752771 ggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccatttaatacatttaatccaagggtcctgattactgtaaaattaactcac 26752672  T
Q  109 gt 110  Q
    ||    
T  26752671 gt 26752670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 24933838 - 24933884
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||||    
T  24933838 caggatccgttgacacctggtgtcaacgaattcattgacaccaaatc 24933884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 15774205 - 15774250
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| |||||||||||||||||||||||  ||| ||||||||||    
T  15774205 aggatccgttgacacctggtgtcaacgaatttgttgacaccaaatc 15774250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 29512370 - 29512419
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||| |||| |||||||||||||||||||||||  ||| ||||||||||    
T  29512370 agtcatgatccgttgacacctggtgtcaacgaatttgttgacaccaaatc 29512419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34812908 - 34812851
Alignment:
Q  8 gtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatt 65  Q
    ||||||||| ||||||||| | |||||||| || ||||||||||||||| || |||||    
T  34812908 gtcaggatccgttgacaccagttgtcaacggattcgttaacaccaaatcctaaccatt 34812851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 18174102 - 18174170
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatc 79  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||||||||| | || |||||| | |||||||    
T  18174102 aggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 18174170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 27177915 - 27177959
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    |||||| ||||||||| ||||||||||||| |||| |||||||||    
T  27177915 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 33512096 - 33512144
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    |||||||||| |||||||||| |||||||||||| |||| |||| ||||    
T  33512096 agtcaggatccgttgacacctagtgtcaacgaattcgttgacactaaat 33512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 1553419 - 1553632
Alignment:
Q  20 tgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaactcacgtgaacgg 116  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   | ||||||| |||||||||||||||||||||| |    
T  1553419 tgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaactcacgtgaaccg 1553518  T
Q  117 ttcagcacttgatccccccta-----cacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaagcttctttttcttatc 211  Q
    |||  ||||||||||||||||     ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1553519 ttctccacttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaagcttctttttcttatc 1553618  T
Q  212 aattatcacaaatc 225  Q
    ||||||||||||||    
T  1553619 aattatcacaaatc 1553632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 4084878 - 4084927
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  4084878 agtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatc 4084927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 1554132 - 1554030
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactca 107  Q
    |||||| ||||||||| ||||||||||||| |||| |||||||||| || ||||||| ||  ||||||||   | |||  |||||||| |||||||||||    
T  1554132 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtcccgattattgtaaaattaactca 1554033  T
Q  108 cgt 110  Q
    |||    
T  1554032 cgt 1554030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 19360529 - 19360481
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    |||||||||| ||||||||| ||||||||||||| |||| |||||||||    
T  19360529 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 19360481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 1283524 - 1283557
Alignment:
Q  18 gttgacacctggtgtcaacgaatccgttaacacc 51  Q
    |||||||||||||||||||||||||||| |||||    
T  1283524 gttgacacctggtgtcaacgaatccgttgacacc 1283557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 10554574 - 10554541
Alignment:
Q  18 gttgacacctggtgtcaacgaatccgttaacacc 51  Q
    |||||||||||||||||||||||||||| |||||    
T  10554574 gttgacacctggtgtcaacgaatccgttgacacc 10554541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 13306322 - 13306273
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||| ||||||    
T  13306322 agtcaggatccgttgacacctgatgtcaacgaattcgttgacatcaaatc 13306273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 17071843 - 17071775
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatc 79  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||||||||| | || |||||| | |||||||    
T  17071843 aggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 17071775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 31081997 - 31082029
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaa 39  Q
    |||||||||| ||||||||||||||||||||||    
T  31081997 agtcaggatccgttgacacctggtgtcaacgaa 31082029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 27442194 - 27441969
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaa 103  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   | ||||||| |||||||||||    
T  27442194 agtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaa 27442095  T
Q  104 ctcacgtgaacggttcagcacttgatccccccta----cacactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaagctt 199  Q
    |||||||||||  |||  ||||||||||||||||    ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||    
T  27442094 ctcacgtgaaccattctccacttgatcccccctaatctcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaagaatgaaaactt 27441995  T
Q  200 ctttttcttatcaattatcacaaatc 225  Q
    ||||||||||||||||||||||||||    
T  27441994 ctttttcttatcaattatcacaaatc 27441969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 183318 - 183464
Alignment:
Q  84 cctaattattgtgaaattaactcacgtgaacggttcagcacttgatccccccta-----cacactcacaccttctcctttgcgctaaccgccaaagcttg 178  Q
    ||||||||||||||||||||||||| ||||| ||||  |||||||||||| |||     |||||||| |||||||||||||||| |||  |||||||||     
T  183318 cctaattattgtgaaattaactcacatgaaccgttctccacttgatccccgctaatctgcacactcaaaccttctcctttgcgccaactaccaaagctta 183417  T
Q  179 aaagaacaacaatgaaagcttctttttcttatcaattatcacaaatc 225  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  183418 aaagaacaacaatgaaagcttatttttcttatcaattatctcaaatc 183464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 26652292 - 26652341
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  26652292 agtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 26652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 3417356 - 3417405
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||||||||||| ||||||| ||||||| |||| ||||||||||    
T  3417356 agtcaggatctgttgacatctggtgttaacgaattcgttgacaccaaatc 3417405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 32979877 - 32979828
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| |||||||||||||  ||||||||||||||    
T  32979877 agtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatc 32979828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 37064815 - 37064864
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||||||||||||| ||||||||||||| | || ||||||||||    
T  37064815 agtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatc 37064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 39778917 - 39778966
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||||||  |||||||| ||||||||||||| |||||||||||||||    
T  39778917 agtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39778966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 39779894 - 39779845
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||||||  |||||||| ||||||||||||| |||||||||||||||    
T  39779894 agtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39779845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 17725704 - 17725645
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttatt 69  Q
    ||||||| ||||||| | ||||||||||||| |||| |||||||||| || |||||||||    
T  17725704 caggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatcctatccatttatt 17725645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 37732825 - 37732872
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaa 54  Q
    |||||||||| |||||||||||||||||||| || |||| ||||||||    
T  37732825 agtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaa 37732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 183976 - 183893
Alignment:
Q  30 tgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaactcacgt 110  Q
    ||||||||||| ||||||||||||||| || | ||||| ||  |||||||| |   |||| |||||||| ||||||||||||||    
T  183976 tgtcaacgaattcgttaacaccaaatcttaactatttaatacatttaatccaagtgtcctgattattgtaaaattaactcacgt 183893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 8372915 - 8372960
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    ||||||| |||||||||||||||||||| || |||| |||||||||    
T  8372915 caggatccgttgacacctggtgtcaacggattcgttgacaccaaat 8372960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 9197094 - 9197143
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||| ||||||||| ||||||||||||| |||| ||||||||||    
T  9197094 agtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 9197873 - 9197824
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| |||||||||  |||||||||||| |||| ||||||||||    
T  9197873 agtcaggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatc 9197824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 11687013 - 11686968
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||||||||||||||||| |||| |||| |||||    
T  11687013 aggatccgttgacacctggtgtcaacgaattcgttgacactaaatc 11686968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 27441469 - 27441538
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc 80  Q
    |||||| ||||||||| ||||||||||||| |||| ||| |||||| || ||||||| ||  ||||||||    
T  27441469 aggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccatttaatacatttaatcc 27441538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 31602019 - 31602064
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  31602019 aggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 31602064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 32414573 - 32414528
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||||||||| |||||||||| || |||| ||||||||||    
T  32414573 aggatctgttgacaccaggtgtcaacggattcgttgacaccaaatc 32414528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 15198343 - 15198295
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    ||||||||||  ||||||||||||||||||||||  ||| |||||||||    
T  15198343 agtcaggatcctttgacacctggtgtcaacgaatttgttgacaccaaat 15198295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 16684 - 16590
Alignment:
Q  23 cacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatcc---gatcctaattattgtgaaattaactcacgtgaac 114  Q
    ||||||||||||||| ||  |||||||||||||| |||||||||| ||  ||||||||   | || |||||||||||||||||||||||||||||    
T  16684 cacctggtgtcaacggatttgttaacaccaaatcttagccatttaatacatttaatccaagggtcataattattgtgaaattaactcacgtgaac 16590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 16562 - 16516
Alignment:
Q  150 ttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaag 196  Q
    ||||||||||| ||||||  ||||||||||| |||||||||||||||    
T  16562 ttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag 16516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 37852521 - 37852570
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  37852521 agtcaggatccgttgacacctggtgtcaacgaattcgttaacaccaaatc 37852570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 25671168 - 25671226
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatt 65  Q
    |||||||||| ||||||||||||||| |||| || ||||||||||||||| || |||||    
T  25671168 agtcaggatccgttgacacctggtgttaacggattcgttaacaccaaatcctaaccatt 25671226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 12760778 - 12760823
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||||    
T  12760778 aggatccgttgacacctggtgtcaacgaattcgttaacatcaaatc 12760823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 28181535 - 28181580
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||    
T  28181535 aggatccgttgacacctggtgtcaacgaattcgttgacaccaaatc 28181580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 30664030 - 30663981
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| |||||||||||||||||||| || |||| ||||||||||    
T  30664030 agtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaatc 30663981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 36390417 - 36390372
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||    
T  36390417 aggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 4439256 - 4439211
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| |||||||||||||||||||| || |||| ||||||||||    
T  4439256 aggatccgttgacacctggtgtcaacggattcgttgacaccaaatc 4439211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 13262835 - 13262880
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  13262835 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 13262880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 17171933 - 17171977
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    |||||| ||||||||| ||||||||||||| |||| |||||||||    
T  17171933 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 982457 - 982301
Alignment:
Q  47 acaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaactcacgtgaacggttcagcacttgatccccccta-----c 138  Q
    |||||||||| |||||||||| ||  |||||||| |   || |||||||||||||||||||||||||||||  |||  || |||||||| ||||     |    
T  982457 acaccaaatcttagccatttaatacatttaatccaagggtcataattattgtgaaattaactcacgtgaacttttctccatttgatccctcctaatctgc 982358  T
Q  139 acactcacaccttctcctttgcgctaaccgccaaagcttgaaagaacaacaatgaaag 196  Q
    |||||| | | ||||||||| | ||||||  ||||||||||| |||||||||||||||    
T  982357 acactc-ctcgttctcctttcctctaaccaacaaagcttgaatgaacaacaatgaaag 982301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 35718410 - 35718479
Alignment:
Q  42 cgttaacaccaaatcgtagccatttattatgtttaatccga---tcctaattattgtgaaattaactcac 108  Q
    |||| |||||||||| |||||||||| |||||||||||| |   ||||||||||||||||||||||||||    
T  35718410 cgttgacaccaaatcttagccatttaatatgtttaatccaaatgtcctaattattgtgaaattaactcac 35718479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 35719093 - 35719038
Alignment:
Q  170 caaagcttgaaagaacaacaatgaaagcttctttttcttatcaattatcacaaatc 225  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||    
T  35719093 caaagcttgaaagaacaacaataaaagcgtctttttcttatcaatgatctcaaatc 35719038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 10847290 - 10847339
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  10847290 agtcaggatccgttgacacctggtgtcaacgaattcgttaacactaaatc 10847339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 33276891 - 33276953
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttatt 69  Q
    |||||||||||||| ||| |||||||||| | || |||| |||||||||| ||||||||||||    
T  33276891 agtcaggatctgttaacatctggtgtcaatggattcgttgacaccaaatcctagccatttatt 33276953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 14871152 - 14871201
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  14871152 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 14871201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 33277558 - 33277509
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||| ||||||||| ||||||||||||| |||||||||||||||    
T  33277558 agtcagaatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 33277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 13477056 - 13477114
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatt 65  Q
    |||||||||| ||||||||| ||||||||||||| | || |||||||||| || |||||    
T  13477056 agtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatcctaaccatt 13477114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 37988272 - 37988214
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatt 65  Q
    ||||||||||  |||||||| ||||||||||||| |||| ||||||||||  |||||||    
T  37988272 agtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatctcagccatt 37988214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 20212979 - 20213028
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||| ||||||||| ||||||||||||| |||| ||||||||||    
T  20212979 agtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 44029823 - 44029774
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||| ||||||||||||||| |||||| || |||||    
T  44029823 agtcaggatccgttgacatctggtgtcaacgaattcgttaatactaaatc 44029774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37520614 - 37520566
Alignment:
Q  8 gtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||||| ||||| ||| ||||||||||||| |||| ||||||||||    
T  37520614 gtcaggatccgttgataccaggtgtcaacgaattcgttgacaccaaatc 37520566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 8489333 - 8489284
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  8489333 agtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 8489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 20834020 - 20833972
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    |||||||||| ||||||||| ||||| |||||||||||| |||||||||    
T  20834020 agtcaggatccgttgacaccaggtgttaacgaatccgttgacaccaaat 20833972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 19323817 - 19323771
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  19323817 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 19323771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 2512439 - 2512484
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    ||||||| ||||||||||| ||||||||||| |||| |||||||||    
T  2512439 caggatccgttgacacctgatgtcaacgaattcgttgacaccaaat 2512484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 19653968 - 19654040
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatc 79  Q
    ||||| ||||||||||||||||||||||| | |  |||| |||||||||| || || |||||| | |||||||    
T  19653968 agtcaagatctgttgacacctggtgtcaatggactcgttgacaccaaatcttaaccgtttattttatttaatc 19654040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 598524 - 598573
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  598524 agtcaggatctgttgacaccagatgtcaacgaattcgttaacaccaaatc 598573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 31329771 - 31329713
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatt 65  Q
    |||||||||| ||||||||| |||||||||| || ||||||||||||||| || |||||    
T  31329771 agtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccatt 31329713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 44792690 - 44792641
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||||||  |||||||| ||||||||||||| |||||||||||||||    
T  44792690 agtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 44792641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 47785853 - 47785804
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||||||||||||| |||||||||| || |||| ||||||||||    
T  47785853 agtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatc 47785804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 40347556 - 40347602
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||  |||||||| |||||||||||||||||| ||||||||||    
T  40347556 caggatccattgacaccaggtgtcaacgaatccgtttacaccaaatc 40347602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 599351 - 599306
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| |||||||||||||||||||| || |||| ||||||||||    
T  599351 aggatccgttgacacctggtgtcaacggattcgttgacaccaaatc 599306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 8247695 - 8247744
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| |||||||||||||||||||| || |||| |||| |||||    
T  8247695 agtcaggatccgttgacacctggtgtcaacggattcgttgacacaaaatc 8247744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 11938714 - 11938759
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||| ||||||||||||| |||| ||||||||||    
T  11938714 aggatctgttcacaccaggtgtcaacgaattcgttgacaccaaatc 11938759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 16903668 - 16903701
Alignment:
Q  18 gttgacacctggtgtcaacgaatccgttaacacc 51  Q
    |||||||||||||||||||||||||||| |||||    
T  16903668 gttgacacctggtgtcaacgaatccgttgacacc 16903701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 19080387 - 19080432
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaat 55  Q
    ||||||||||||||||| |||||||||| || |||| |||||||||    
T  19080387 caggatctgttgacaccaggtgtcaacggattcgttgacaccaaat 19080432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 24374788 - 24374837
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||||| ||||||||| | ||||||||||| |||| ||||||||||    
T  24374788 agtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatc 24374837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 26147082 - 26147037
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  26147082 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 26147037  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 44791723 - 44791772
Alignment:
Q  7 agtcaggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||||||  ||| |||| ||||||||||||| |||||||||||||||    
T  44791723 agtcaggatccattggcaccaggtgtcaacgaattcgttaacaccaaatc 44791772  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 56263114 - 56263077
Alignment:
Q  19 ttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  56263114 ttgacaccaggtgtcaacgaatccgtttacaccaaatc 56263077  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 47687912 - 47687980
Alignment:
Q  11 aggatctgttgacacctggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatc 79  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||||||||| | || |||||| | |||||||    
T  47687912 aggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 47687980  T

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Target: scaffold1207 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 1588 - 1634
Alignment:
Q  10 caggatctgttgacacctggtgtcaacgaatccgttaacaccaaatc 56  Q
    ||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  1588 caggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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