View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535-Insertion-13 (Length: 186)
Name: NF4535-Insertion-13
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-13 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 636340 - 636430
Alignment:
| Q |
83 |
ggcaaagcttctgaaaattttaagaattaaatttcaaaatactcgcagcattacaaaatcattttaactacctttcctaaaaatacgagtg |
173 |
Q |
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| T |
636340 |
ggcaaagcttctgaaaattttaagaattgaatttcaaaatactcgcagcattacaaaatcattttaacttcctttcctaaaaatacgagtg |
636430 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 33447517 - 33447575
Alignment:
| Q |
23 |
ttgatttagtttttaatttatgaaaactccacagcttataaacaataactcctaactca |
81 |
Q |
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| T |
33447517 |
ttgatttagtttctaacttatgaaaactccacatcttataaacaacaattccaaactca |
33447575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 5482472 - 5482558
Alignment:
| Q |
40 |
ttatgaaaactccacagcttataaacaataactcctaactcacggcaaagcttct-gaaaattttaagaattaaatttcaaaatact |
125 |
Q |
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| T |
5482472 |
ttatgaaaactccacatcttataaacaataattccaaactcatagccatgattctggaaaatttgaagcatttgatttcaaaatact |
5482558 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 2680839 - 2680753
Alignment:
| Q |
40 |
ttatgaaaactccacagcttataaacaataactcctaactcacggcaaagcttct-gaaaattttaagaattaaatttcaaaatact |
125 |
Q |
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| T |
2680839 |
ttatgaaaactccacatcttataaacaataattccaaactcatagccatgattctggaaaatttgaagcatttgatttcaaaatact |
2680753 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 45004265 - 45004179
Alignment:
| Q |
40 |
ttatgaaaactccacagcttataaacaataactcctaactcacggcaaagcttct-gaaaattttaagaattaaatttcaaaatact |
125 |
Q |
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|||||||||||||||| |||||||||||||| ||| |||||| || | | |||| |||||||| ||| ||| ||||||||||||| |
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| T |
45004265 |
ttatgaaaactccacatcttataaacaataattccaaactcatagccatgattctggaaaatttgaagcatttgatttcaaaatact |
45004179 |
T |
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