View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4535-Insertion-2 (Length: 817)
Name: NF4535-Insertion-2
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Original strand, 12368234 - 12368743
Alignment:
| Q |
6 |
caggcaggacctggatgaatcagtattttaggccggaacaagaaaaaattacaaattttttatgcaaaatacacaaagttgggtattgttccatcatata |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12368234 |
caggcaggacctggatgaatcagtattttaggccagaacaagaaaaaattacaaattttttatgcaaaatacacaaagttgggtattgttccatcatata |
12368333 |
T |
|
| Q |
106 |
tttgtgtgttttatttacggtttgagtcaaatttgaatattaatggcttgagttacgtgaatctgaaccaacccacaaaatgttaatgtttataaccccc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12368334 |
tttgtgtgttttatttacggtttgagtcaaatttgaatattaatggcttgagttacgtgaatctgaaccaacccacaaaatgtttatgtttataacccc- |
12368432 |
T |
|
| Q |
206 |
aacctacgagcacctggctttctagaacatggttggtagcttctaagcagatcaactgatttgatacgcatgatgaattaaatcattgttaatcaagaca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12368433 |
aacctacgagcacctggctttctagaacatggttggtagcttctaagcagatcaactgatttgatacgcatgatgaattaaatcatcgttaatcaagaca |
12368532 |
T |
|
| Q |
306 |
tgataattgtgtggtatatgctactgacattgatcattttatcactagggacaaaggaagcagttagttgttagattaatatttactccttcatttgaat |
405 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12368533 |
tgataattgtgtggaatatgctactgacattgatcattttatcactagggacaaaggaagcagttagttgttagattaatatttactccttcatttgaat |
12368632 |
T |
|
| Q |
406 |
ttaaacttggaatatgatatcactcttttacgtgtttgagctattattcatatcgatgtggacagactatcatgagattttagcctagctcaattaaatt |
505 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12368633 |
ttaaacttggaatatgatatcactcttttacgtatttgagctattattcatatcgacgtggacagactatcatgagattttagcctagctcgattaaatt |
12368732 |
T |
|
| Q |
506 |
taggtgttatt |
516 |
Q |
| |
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||| ||||||| |
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| T |
12368733 |
tagatgttatt |
12368743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 558 - 817
Target Start/End: Original strand, 12368750 - 12369001
Alignment:
| Q |
558 |
aggatagttcttctcattgcttgaaatgaaccaacattattcattctaaatttgaccttaatataaataatgttggggttccactctagggacataatat |
657 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12368750 |
aggatagttcttctcattgcttgaaatgaaccaacattattcattctaaatttgacctgaatataaataatgttggggttccactctagggacataatat |
12368849 |
T |
|
| Q |
658 |
ctccaatggcatgtaccattaaccgatcagagtgtgccatatcatggcacaccttttnnnnnnnnnnnnnnnnnnnnngctttatgagaaaacaaaacca |
757 |
Q |
| |
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||| |||||||||||||||| | ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |
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| T |
12368850 |
ctctaatggcatgtaccattgatcgatcagagtgtgccat---atgacacaccttttaaaaaaaataaaaataaaaaagctttatgagaaaacaaaacca |
12368946 |
T |
|
| Q |
758 |
ggaactcgttcctcttctcccttcctcctacatcacttttcaactcatcgtcaactttcc |
817 |
Q |
| |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12368947 |
gg-----gttcctcttctccctgcctcctacatcacttttcaactcatcgtcaactttcc |
12369001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 774 - 817
Target Start/End: Original strand, 12369001 - 12369044
Alignment:
| Q |
774 |
ctcccttcctcctacatcacttttcaactcatcgtcaactttcc |
817 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
12369001 |
ctccctgcttcctacatcacttttcaactcatcgtcaactttcc |
12369044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 399
Target Start/End: Original strand, 15682168 - 15682203
Alignment:
| Q |
364 |
agcagttagttgttagattaatatttactccttcat |
399 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
15682168 |
agcaattagttgttagattaatatttactccttcat |
15682203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 369 - 399
Target Start/End: Complemental strand, 10799292 - 10799262
Alignment:
| Q |
369 |
ttagttgttagattaatatttactccttcat |
399 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
10799292 |
ttagttgttagattaatatttactccttcat |
10799262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 401
Target Start/End: Complemental strand, 20601892 - 20601858
Alignment:
| Q |
367 |
agttagttgttagattaatatttactccttcattt |
401 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
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|
| T |
20601892 |
agttagttgttaaattaatatttactccttcattt |
20601858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 7879061 - 7879094
Alignment:
| Q |
364 |
agcagttagttgttagattaatatttactccttc |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
7879061 |
agcaattagttgttagattaatatttactccttc |
7879094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 397
Target Start/End: Complemental strand, 38569469 - 38569439
Alignment:
| Q |
367 |
agttagttgttagattaatatttactccttc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
38569469 |
agttagttgttagattaatatttactccttc |
38569439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 33257206 - 33257243
Alignment:
| Q |
369 |
ttagttgttagattaatatttactccttcatttgaatt |
406 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
33257206 |
ttagttgttagattaatatttactcattcattcgaatt |
33257243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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