View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535-Insertion-3 (Length: 812)
Name: NF4535-Insertion-3
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 28367404 - 28367804
Alignment:
| Q |
6 |
cattgcacaccaggggcctatgtcaaatgcacatataatcaattgtaaattctatttatgtagcttgattatattgatccaaataatagatatcttatta |
105 |
Q |
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| T |
28367404 |
cattgcacaccaggggcctatgtcaaatgcacatataatcaattgtaaattctatttatgtagcttgattatattgatccaaataatagatatcttatta |
28367503 |
T |
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| Q |
106 |
ttgag---taagaagcaagctacacaaaagcttcacaaatgatatcaagcatgcaattttcttcttgagttcgtcttcataacagttgcaaacaatcatg |
202 |
Q |
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| T |
28367504 |
ttgagagctaagaagcaagctacacaaaagcttcacaaatgatatcaagcatgcaattttcttcttgagttcgtcttcataacagttgcaaacaatcatg |
28367603 |
T |
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| Q |
203 |
caagtgcgaggaagcagatgagctggttaggaatcctaacagaagacgggcatgagcagcggatagagggttaacttcttgagttcatctgcatatcagt |
302 |
Q |
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| T |
28367604 |
caagtgcgaggaagcagatgagctggttaggaatcctaacagaagatgggcatgagcagcggatagagggttaacttcttgagttcatctgcatatcagt |
28367703 |
T |
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| Q |
303 |
cgcagacaatcatgcgtacatgaggaagcatgtgagctagtttggagccctgacagaagataggtatgaacagcatagagagggaggtgcagaggagtgt |
402 |
Q |
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| T |
28367704 |
cgcagacaatcatgcgtacatgaggaagcatgtgagctagttaggagccctgacagaagataggtatgaacagcggagagagggaggtgcagaggagtgt |
28367803 |
T |
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| Q |
403 |
g |
403 |
Q |
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| T |
28367804 |
g |
28367804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 681 - 812
Target Start/End: Original strand, 28368080 - 28368211
Alignment:
| Q |
681 |
taacatttgccaccctacccccacactgtggaactttacatggttctcaagtttgacagaagacaagtcctttctattaatccaccacaaataatataaa |
780 |
Q |
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| T |
28368080 |
taacatttgccaccctacccccacactgtggaactttacatggttctcaagtttgacagaagacaagtcctttccattaatccaccacaaataatataaa |
28368179 |
T |
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| Q |
781 |
agtactaaacatgccgcatgctccagacttta |
812 |
Q |
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| T |
28368180 |
ggtactaaacatgccgcatgctccagatttta |
28368211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 504 - 634
Target Start/End: Original strand, 28367903 - 28368033
Alignment:
| Q |
504 |
cagggtctctgaatttgaatttcgaaatatgaattaaagagaataaaaagtgagtaagtgatgtgctgaagaagccatgtgttgaggttgacacatagaa |
603 |
Q |
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| T |
28367903 |
cagggtctctgaatttgaatttcgaaatatgaattaaagagaataaaaagtgagcaagcgatgtgctgaagaagccatgtgttgaggttgacacatagaa |
28368002 |
T |
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| Q |
604 |
aattcctctaacaccacattacaattttatg |
634 |
Q |
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| T |
28368003 |
aattcctctaacactacattacaattttatg |
28368033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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