View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535-Insertion-4 (Length: 710)
Name: NF4535-Insertion-4
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Complemental strand, 11485590 - 11485077
Alignment:
| Q |
8 |
acatcgagccccataatgccacacacacaaccacacccccactaccttcgttgcccctcctgcgcatcacactcctccactctcccttttttccttttct |
107 |
Q |
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| T |
11485590 |
acatcgagccccataacgccacacacacaaccacacccccactaccttcgttgcccctcctgcgcatcacactcctccactctcccttttttccttttct |
11485491 |
T |
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| Q |
108 |
agctcttgataaaacactaaacttgttggcgttatggggctctagtgtattactaaggcctttcagtaatacagactttatccctctaaaaataagtaat |
207 |
Q |
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| T |
11485490 |
agctcttgataaaacactaaacttgttggcgttatggggctctagtgtattactaaggcctttcagtaatacagactttatccctctaaaaaaaagtaat |
11485391 |
T |
|
| Q |
208 |
atagactttatgcaacaattgttgaagtgtttctaaatttaaatagta-nnnnnnnaaaacatttttcaatgtaaatgttactgaaccttgaatatgttg |
306 |
Q |
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| T |
11485390 |
atagactttatgcaacaattgttgaagtgtttctaaatttaaatagtattttttttaatacatttttcaatgtaaatgttactgaaccttgaatatgttg |
11485291 |
T |
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| Q |
307 |
tagtgacgatttgttactaacattccttttctagatctttttactaaaaatagtaaaggtacacctttaaaccatttttaagaaatttatatcagacaca |
406 |
Q |
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| T |
11485290 |
tagtgacgatttgttactaac---ccttttgtagatctttttactaaaaatagtaaaggtacacctttaaaccatttttaagaaatttatattagacaca |
11485194 |
T |
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| Q |
407 |
ccctcaaacatatatacgaggtatcaagttgaatatcatagagaatatgggaacaatacatagacnnnnnnntaataataaaagcctatgcaaccaaact |
506 |
Q |
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| T |
11485193 |
ccctcaaacatatatacgaggtacgaagttgaatatcatagagaatatgggaacaatacatagacaaaaaaataataaagaaagcctatccaaccaaact |
11485094 |
T |
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| Q |
507 |
aaatattttttcagaga |
523 |
Q |
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| T |
11485093 |
aaatattttttcagaga |
11485077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 618 - 710
Target Start/End: Complemental strand, 11484948 - 11484856
Alignment:
| Q |
618 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctacacatttagattcaaaggtcttttg |
710 |
Q |
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| T |
11484948 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctaaacatttagattcaaaggtcttttg |
11484856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 525 - 585
Target Start/End: Complemental strand, 11485041 - 11484981
Alignment:
| Q |
525 |
caaaactaaatatatagtatttggtggaatgtatgaatgagttttactatatcaaattgtc |
585 |
Q |
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| T |
11485041 |
caaaattaaatatatagtatttggtggaatgtatgaaagagttttactatatcaaattgtc |
11484981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 9472711 - 9472674
Alignment:
| Q |
344 |
tttttactaaaaatagtaaaggtacacctttaaaccat |
381 |
Q |
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| T |
9472711 |
tttttactaaaaatagtaaaggtccacctttgaaccat |
9472674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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