View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4535-Insertion-5 (Length: 682)

Name: NF4535-Insertion-5
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4535-Insertion-5
NF4535-Insertion-5
[»] chr6 (13 HSPs)
chr6 (8-145)||(33597432-33597565)
chr6 (179-213)||(29383671-29383705)
chr6 (176-213)||(31517100-31517137)
chr6 (176-216)||(2582773-2582813)
chr6 (176-211)||(1196151-1196186)
chr6 (179-213)||(31480759-31480793)
chr6 (176-213)||(1897800-1897837)
chr6 (294-326)||(6435037-6435069)
chr6 (154-213)||(8395451-8395508)
chr6 (184-216)||(21857497-21857529)
chr6 (294-326)||(25127871-25127903)
chr6 (294-326)||(30796113-30796145)
chr6 (294-326)||(32457290-32457322)
[»] chr8 (26 HSPs)
chr8 (155-213)||(426215-426270)
chr8 (176-212)||(3989020-3989056)
chr8 (178-213)||(26507825-26507860)
chr8 (176-213)||(22767244-22767281)
chr8 (176-213)||(27836294-27836331)
chr8 (294-326)||(1370312-1370344)
chr8 (182-213)||(23258146-23258177)
chr8 (155-213)||(42996576-42996632)
chr8 (183-213)||(37101613-37101643)
chr8 (183-213)||(42543408-42543438)
chr8 (175-213)||(42689899-42689937)
chr8 (176-213)||(7678846-7678883)
chr8 (179-208)||(42047454-42047483)
chr8 (294-326)||(1796497-1796529)
chr8 (294-326)||(3155844-3155876)
chr8 (294-326)||(3988906-3988938)
chr8 (294-326)||(5502372-5502404)
chr8 (294-326)||(10644840-10644872)
chr8 (294-326)||(12732843-12732875)
chr8 (294-326)||(21526319-21526351)
chr8 (294-326)||(22852877-22852909)
chr8 (294-326)||(28927682-28927714)
chr8 (294-326)||(35937550-35937582)
chr8 (173-213)||(37524345-37524385)
chr8 (294-326)||(43066632-43066664)
chr8 (294-326)||(45101397-45101429)
[»] chr5 (29 HSPs)
chr5 (155-216)||(471925-471984)
chr5 (176-213)||(19376052-19376089)
chr5 (176-213)||(39595388-39595425)
chr5 (179-215)||(33910011-33910047)
chr5 (182-213)||(5130304-5130335)
chr5 (174-213)||(11666293-11666332)
chr5 (183-213)||(10232613-10232643)
chr5 (183-213)||(12661874-12661904)
chr5 (176-213)||(125206-125243)
chr5 (176-213)||(2117560-2117597)
chr5 (176-213)||(11306810-11306847)
chr5 (301-338)||(20125379-20125415)
chr5 (176-213)||(20719935-20719972)
chr5 (176-213)||(28811542-28811579)
chr5 (176-213)||(29402296-29402333)
chr5 (179-216)||(31329049-31329086)
chr5 (176-213)||(33567159-33567196)
chr5 (153-213)||(42909833-42909891)
chr5 (294-326)||(2050928-2050960)
chr5 (294-326)||(6865814-6865846)
chr5 (294-326)||(18695319-18695351)
chr5 (294-326)||(19127125-19127157)
chr5 (294-326)||(19271860-19271892)
chr5 (294-326)||(23991172-23991204)
chr5 (294-326)||(28811430-28811462)
chr5 (294-334)||(31329164-31329204)
chr5 (294-326)||(34381013-34381045)
chr5 (294-326)||(36713216-36713248)
chr5 (294-326)||(39595273-39595305)
[»] chr2 (31 HSPs)
chr2 (155-213)||(37085120-37085178)
chr2 (176-213)||(42251840-42251877)
chr2 (174-213)||(6639390-6639429)
chr2 (179-213)||(1889261-1889295)
chr2 (179-213)||(18917738-18917772)
chr2 (176-213)||(3091855-3091892)
chr2 (176-213)||(11164296-11164333)
chr2 (176-213)||(12600162-12600199)
chr2 (176-213)||(13711175-13711212)
chr2 (176-213)||(23045275-23045312)
chr2 (176-213)||(31296763-31296800)
chr2 (176-213)||(36133088-36133125)
chr2 (173-213)||(14140256-14140296)
chr2 (173-216)||(7121473-7121516)
chr2 (294-324)||(12065920-12065950)
chr2 (183-213)||(12066023-12066053)
chr2 (182-216)||(14714097-14714131)
chr2 (294-331)||(36435677-36435714)
chr2 (176-213)||(43650467-43650504)
chr2 (294-326)||(4738610-4738642)
chr2 (294-326)||(5031924-5031956)
chr2 (294-326)||(5167780-5167812)
chr2 (294-326)||(6365187-6365219)
chr2 (294-326)||(15283288-15283320)
chr2 (294-338)||(17159555-17159599)
chr2 (294-326)||(30856808-30856840)
chr2 (294-326)||(33296109-33296141)
chr2 (294-326)||(36132975-36133007)
chr2 (294-326)||(41040267-41040299)
chr2 (294-326)||(42283277-42283309)
chr2 (294-326)||(44484694-44484726)
[»] scaffold0054 (1 HSPs)
scaffold0054 (155-213)||(31502-31557)
[»] scaffold0076 (1 HSPs)
scaffold0076 (155-213)||(11306-11362)
[»] chr3 (31 HSPs)
chr3 (174-213)||(39604164-39604203)
chr3 (179-213)||(24551150-24551184)
chr3 (176-213)||(5188350-5188387)
chr3 (176-213)||(11173564-11173601)
chr3 (176-213)||(29706017-29706054)
chr3 (176-213)||(35272141-35272178)
chr3 (294-326)||(34271528-34271560)
chr3 (182-215)||(3483231-3483264)
chr3 (176-213)||(20380809-20380846)
chr3 (294-335)||(20380927-20380967)
chr3 (184-213)||(32457683-32457712)
chr3 (176-213)||(37215151-37215188)
chr3 (176-213)||(37302994-37303031)
chr3 (184-213)||(46473242-46473271)
chr3 (294-326)||(108432-108464)
chr3 (294-326)||(1901964-1901996)
chr3 (294-326)||(1911410-1911442)
chr3 (294-326)||(5398919-5398951)
chr3 (294-326)||(12792639-12792671)
chr3 (294-326)||(14957837-14957869)
chr3 (294-326)||(18169158-18169190)
chr3 (294-326)||(20215949-20215981)
chr3 (294-326)||(29573394-29573426)
chr3 (176-216)||(32536852-32536891)
chr3 (294-326)||(34607958-34607990)
chr3 (294-326)||(35272028-35272060)
chr3 (176-216)||(37303494-37303534)
chr3 (294-326)||(43176203-43176235)
chr3 (294-326)||(48945848-48945880)
chr3 (176-216)||(50294044-50294084)
chr3 (294-326)||(51464310-51464342)
[»] chr4 (36 HSPs)
chr4 (157-213)||(49194997-49195050)
chr4 (155-213)||(9162180-9162236)
chr4 (156-204)||(28203513-28203562)
chr4 (176-213)||(42915139-42915176)
chr4 (176-213)||(51717204-51717241)
chr4 (294-326)||(51389112-51389144)
chr4 (176-212)||(51389431-51389467)
chr4 (174-213)||(24337274-24337313)
chr4 (301-340)||(46794546-46794585)
chr4 (183-213)||(31240762-31240792)
chr4 (183-213)||(48372153-48372183)
chr4 (176-213)||(4896420-4896457)
chr4 (176-213)||(31275260-31275297)
chr4 (179-216)||(34116463-34116500)
chr4 (176-213)||(35580224-35580261)
chr4 (297-326)||(53091260-53091289)
chr4 (294-326)||(4896538-4896570)
chr4 (294-326)||(6370981-6371013)
chr4 (294-326)||(11064127-11064159)
chr4 (294-326)||(11997686-11997718)
chr4 (294-326)||(12638826-12638858)
chr4 (294-326)||(15596397-15596429)
chr4 (294-326)||(25725732-25725764)
chr4 (294-326)||(26440677-26440709)
chr4 (294-326)||(26885292-26885324)
chr4 (294-326)||(34116578-34116610)
chr4 (176-216)||(35017264-35017304)
chr4 (295-327)||(35908416-35908448)
chr4 (294-326)||(37547066-37547098)
chr4 (176-212)||(38160693-38160729)
chr4 (294-326)||(41119508-41119540)
chr4 (183-215)||(41952940-41952972)
chr4 (301-333)||(45257209-45257241)
chr4 (294-326)||(46173551-46173583)
chr4 (294-326)||(47288083-47288115)
chr4 (294-326)||(47998595-47998627)
[»] chr7 (23 HSPs)
chr7 (176-213)||(2790291-2790328)
chr7 (155-211)||(28861998-28862052)
chr7 (294-326)||(2790178-2790210)
chr7 (294-326)||(30941179-30941211)
chr7 (179-213)||(39875732-39875766)
chr7 (176-213)||(12102629-12102666)
chr7 (176-213)||(33684794-33684831)
chr7 (297-326)||(42942420-42942449)
chr7 (154-210)||(43025924-43025978)
chr7 (294-326)||(2469704-2469736)
chr7 (294-326)||(8459615-8459647)
chr7 (176-216)||(19510277-19510317)
chr7 (294-326)||(22330658-22330690)
chr7 (294-326)||(25940670-25940702)
chr7 (294-326)||(31982058-31982090)
chr7 (294-326)||(37352017-37352049)
chr7 (294-326)||(41966333-41966365)
chr7 (294-326)||(43213320-43213352)
chr7 (301-333)||(43444629-43444661)
chr7 (176-208)||(45432062-45432094)
chr7 (294-326)||(46829480-46829512)
chr7 (294-326)||(48314399-48314431)
chr7 (176-212)||(48866850-48866886)
[»] chr1 (25 HSPs)
chr1 (176-213)||(22389445-22389482)
chr1 (176-213)||(50659112-50659149)
chr1 (155-213)||(16836016-16836071)
chr1 (294-326)||(25098826-25098858)
chr1 (294-325)||(51339738-51339769)
chr1 (179-213)||(25302568-25302602)
chr1 (179-213)||(34187378-34187412)
chr1 (176-213)||(366771-366808)
chr1 (176-213)||(5477083-5477120)
chr1 (176-213)||(36418193-36418230)
chr1 (176-213)||(37690529-37690566)
chr1 (176-213)||(39010928-39010965)
chr1 (176-213)||(40610343-40610380)
chr1 (294-326)||(5309078-5309110)
chr1 (294-326)||(14983785-14983817)
chr1 (294-326)||(15466759-15466791)
chr1 (294-326)||(21433439-21433471)
chr1 (294-326)||(25302681-25302713)
chr1 (294-326)||(31427995-31428027)
chr1 (294-326)||(32821636-32821668)
chr1 (294-326)||(32966268-32966300)
chr1 (294-326)||(45740582-45740614)
chr1 (294-326)||(49425739-49425771)
chr1 (294-326)||(49453492-49453524)
chr1 (294-326)||(50226917-50226949)
[»] scaffold0011 (2 HSPs)
scaffold0011 (179-213)||(219587-219621)
scaffold0011 (294-326)||(219702-219734)
[»] scaffold0002 (1 HSPs)
scaffold0002 (183-216)||(6538-6571)
[»] scaffold0184 (1 HSPs)
scaffold0184 (294-326)||(16632-16664)
[»] scaffold0131 (1 HSPs)
scaffold0131 (294-326)||(15572-15604)
[»] scaffold0078 (1 HSPs)
scaffold0078 (294-326)||(56180-56212)
[»] scaffold0049 (1 HSPs)
scaffold0049 (294-326)||(72207-72239)
[»] scaffold0026 (1 HSPs)
scaffold0026 (294-326)||(113626-113658)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 7e-57; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 33597432 - 33597565
Alignment:
Q  8 gtaagacattactcatatcagcttgaatcaaacatttacatttgaattgataagttggtcattatgtttcaaaacttaatatcaaataggtatttatatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33597432 gtaagacattactcatatcagcttgaatcaaacatttacatttgaattgataagttggtcattatgtttcaaaacttaatatcaaataggtatttatatt 33597531  T
Q  108 taattatttactatcaacttattctttaacatatactc 145  Q
    ||||||||| ||||    ||| ||||||||||||||||    
T  33597532 taattatttgctat----ttaatctttaacatatactc 33597565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 29383705 - 29383671
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||||||    
T  29383705 ttatgtgacaacttcttttttctctcttttcattg 29383671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 31517100 - 31517137
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  31517100 aacttatgtgacaacttcttttttctctctttttattg 31517137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 2582813 - 2582773
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  2582813 aacttttgtgacaacctcttttttctctcttttcattgatc 2582773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 1196186 - 1196151
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcat 211  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1196186 aacttatgtgataacttcttttttctctcttttcat 1196151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 31480759 - 31480793
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||| ||||    
T  31480759 ttatgtgacaacttcttttttctctctttttattg 31480793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 1897837 - 1897800
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  1897837 aacttttgtgacaacctcttttttctctcttttcattg 1897800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 6435069 - 6435037
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  6435069 ttgtcacaaagtggttgtacaaatatcatttct 6435037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 8395508 - 8395451
Alignment:
Q  154 tgagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||| |||||||||||| |  |||| ||||| || ||||||||||||||||||||    
T  8395508 tgagtagtgttatttgaacaatca--tatgagacaatttattttttctctcttttcattg 8395451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 21857497 - 21857529
Alignment:
Q  184 tgacaacttcttttttctctcttttcattgatc 216  Q
    ||||||||||||||||||||||||| |||||||    
T  21857497 tgacaacttcttttttctctctttttattgatc 21857529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 25127871 - 25127903
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  25127871 ttgttacaaaatggttgtacaaatatcatttct 25127903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 30796113 - 30796145
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  30796113 ttgtcacaaagtggttgtacaaatatcatttct 30796145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 32457290 - 32457322
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  32457290 ttgtcacaaagtggttgtacaaatatcatttct 32457322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 426270 - 426215
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  426270 gagtagtgatatttgaacaa---cttatgtgacaacttcttttttctctcttttcattg 426215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 3989056 - 3989020
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcatt 212  Q
    |||||||||||||||||||||||||||||||||||||    
T  3989056 aacttatgtgacaacttcttttttctctcttttcatt 3989020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 26507825 - 26507860
Alignment:
Q  178 cttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||||||    
T  26507825 cttatgtgacaacttcttttttctctcttttcattg 26507860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 22767281 - 22767244
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  22767281 aacttttgtgacaacttcttttttctctcttttcattg 22767244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 27836331 - 27836294
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||| |||||||||||||||    
T  27836331 aacttatgtgacaacttcttttctctctcttttcattg 27836294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 1370312 - 1370344
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||||||||||||||||||||||    
T  1370312 ttgttacaaagtggttgtacaaatatcatttct 1370344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 23258177 - 23258146
Alignment:
Q  182 tgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||    
T  23258177 tgtgacaacttcttttttctctcttttcattg 23258146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 42996632 - 42996576
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||| |||||||||||| |   ||| |||||||||||||||||||||||||||||    
T  42996632 gagtagtgttatttgaacaatcaa--atgagacaacttcttttttctctcttttcattg 42996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 37101613 - 37101643
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  37101613 gtgacaacttcttttttctctcttttcattg 37101643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 42543408 - 42543438
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  42543408 gtgacaacttcttttttctctcttttcattg 42543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 42689937 - 42689899
Alignment:
Q  175 taacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  42689937 taacttttgtgacaatttcttttttctctcttttcattg 42689899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 7678883 - 7678846
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  7678883 aacttttgtaacaacttcttttttctctcttttcattg 7678846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 208
Target Start/End: Complemental strand, 42047483 - 42047454
Alignment:
Q  179 ttatgtgacaacttcttttttctctctttt 208  Q
    ||||||||||||||||||||||||||||||    
T  42047483 ttatgtgacaacttcttttttctctctttt 42047454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 1796529 - 1796497
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  1796529 ttgtcacaaagtggttgtacaaatatcatttct 1796497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 3155876 - 3155844
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  3155876 ttgttaaaaagtggttgtacaaatatcatttct 3155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 3988938 - 3988906
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  3988938 ttgttagaaagtggttgtacaaatatcatttct 3988906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 5502404 - 5502372
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  5502404 ttgtcacaaagtggttgtacaaatatcatttct 5502372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 10644840 - 10644872
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  10644840 ttgttacaaaatggttgtacaaatatcatttct 10644872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 12732875 - 12732843
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  12732875 ttgtcacaaagtggttgtacaaatatcatttct 12732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 21526319 - 21526351
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  21526319 ttgttaaaaagtggttgtacaaatatcatttct 21526351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 22852877 - 22852909
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  22852877 ttgtcacaaagtggttgtacaaatatcatttct 22852909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 28927714 - 28927682
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  28927714 ttgtcacaaagtggttgtacaaatatcatttct 28927682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 35937550 - 35937582
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  35937550 ttgttacaaaatggttgtacaaatatcatttct 35937582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 37524345 - 37524385
Alignment:
Q  173 aataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  37524345 aataacctttgtgacaacctcttttttctctcttttcattg 37524385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 43066632 - 43066664
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  43066632 ttgttaaaaagtggttgtacaaatatcatttct 43066664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 45101429 - 45101397
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  45101429 ttgtcacaaagtggttgtacaaatatcatttct 45101397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 471984 - 471925
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    |||||||| |||||||||||| |  |||| ||||||||||||||||||||||||||||||||    
T  471984 gagtagtgttatttgaacaatca--tatgagacaacttcttttttctctcttttcattgatc 471925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 19376052 - 19376089
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19376052 aacttatgtgacaacttcttttttctctcttttcattg 19376089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 39595425 - 39595388
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  39595425 aacttttgtgacaacttcttttttctctcttttcattg 39595388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 33910011 - 33910047
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattgat 215  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33910011 ttatgtgacaacttcttttctctctcttttcattgat 33910047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 5130304 - 5130335
Alignment:
Q  182 tgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||    
T  5130304 tgtgacaacttcttttttctctcttttcattg 5130335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 11666332 - 11666293
Alignment:
Q  174 ataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  11666332 ataacttttgtaacaacttcttttttctctcttttcattg 11666293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 10232643 - 10232613
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  10232643 gtgacaacttcttttttctctcttttcattg 10232613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 12661874 - 12661904
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  12661874 gtgacaacttcttttttctctcttttcattg 12661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 125243 - 125206
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  125243 aacttttgcgacaacttcttttttctctcttttcattg 125206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 2117560 - 2117597
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  2117560 aacttttgtgacaacttcttttttctcttttttcattg 2117597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 11306847 - 11306810
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  11306847 aacttttgagacaacttcttttttctctcttttcattg 11306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 20125415 - 20125379
Alignment:
Q  301 aaagtggttgtacaaatatcatttcttcaaaaaattat 338  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20125415 aaagtggttgtacaaatatcatttc-tcaaaaaattat 20125379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 20719935 - 20719972
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  20719935 aacttttgtgacaacttcttttctctctcttttcattg 20719972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 28811579 - 28811542
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  28811579 aacttttgtgacaacctcttttttctctcttttcattg 28811542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 29402333 - 29402296
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  29402333 aacttatgtgacaacttcttttttctttctttttattg 29402296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 31329049 - 31329086
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    |||||||||||||||||| || ||||||||||||||||    
T  31329049 ttatgtgacaacttctttattttctcttttcattgatc 31329086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 33567159 - 33567196
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  33567159 aacttttgtgacaatttcttttttctctcttttcattg 33567196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 42909891 - 42909833
Alignment:
Q  153 ttgagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||| |||||||||||  |  |||| ||||||||||||| |||||||||||||||    
T  42909891 ttgagtagtgttatttgaacaacca--tatgagacaacttcttttctctctcttttcattg 42909833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 2050960 - 2050928
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  2050960 ttgttacaaaatggttgtacaaatatcatttct 2050928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 6865814 - 6865846
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  6865814 ttgtcacaaagtggttgtacaaatatcatttct 6865846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 18695351 - 18695319
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  18695351 ttgttacaaaatggttgtacaaatatcatttct 18695319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 19127157 - 19127125
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  19127157 ttgtcacaaagtggttgtacaaatatcatttct 19127125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 19271892 - 19271860
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  19271892 ttgttacaaaatggttgtacaaatatcatttct 19271860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 23991172 - 23991204
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  23991172 ttgtcacaaagtggttgtacaaatatcatttct 23991204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 28811462 - 28811430
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  28811462 ttgtcacaaagtggttgtacaaatatcatttct 28811430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 31329164 - 31329204
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttcttcaaaaaa 334  Q
    |||||| ||||||||||| ||||||||||||||| ||||||    
T  31329164 ttgttataaagtggttgtgcaaatatcatttctttaaaaaa 31329204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 34381045 - 34381013
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  34381045 ttgtcacaaagtggttgtacaaatatcatttct 34381013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 36713216 - 36713248
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  36713216 ttgtcacaaagtggttgtacaaatatcatttct 36713248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 39595305 - 39595273
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  39595305 ttgtcacaaagtggttgtacaaatatcatttct 39595273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 37085120 - 37085178
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||||||| ||||    
T  37085120 gagtagtgatatttgaacaactatatatgtgacaacttcttttttctctctttttattg 37085178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 42251840 - 42251877
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42251840 aacttatgtgacaacttcttttttctctcttttcattg 42251877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 6639390 - 6639429
Alignment:
Q  174 ataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  6639390 ataacttatgtgacaacttcttttctctctcttttcattg 6639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 1889295 - 1889261
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||||||    
T  1889295 ttatgtgacaacttcttttttctctcttttcattg 1889261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 18917772 - 18917738
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||||||    
T  18917772 ttatgtgacaacttcttttttctctcttttcattg 18917738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 3091892 - 3091855
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3091892 aacttttgtgacaacttcttttttctctcttttcattg 3091855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 11164296 - 11164333
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11164296 aacttttgtgacaacttcttttttctctcttttcattg 11164333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 12600199 - 12600162
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  12600199 aacttttgtgacaacttcttttttctctcttttcattg 12600162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 13711212 - 13711175
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13711212 aacttttgtgacaacttcttttttctctcttttcattg 13711175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 23045312 - 23045275
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||| |||||||||    
T  23045312 aacttatgtgacaacttcttttttctctattttcattg 23045275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 31296763 - 31296800
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||| |||||||||||||||||||||||    
T  31296763 aacttatgtgacaatttcttttttctctcttttcattg 31296800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 36133125 - 36133088
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  36133125 aacttttgtgacaacttcttttttctctcttttcattg 36133088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 14140256 - 14140296
Alignment:
Q  173 aataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  14140256 aataacttttgtgacaatttcttttttctctcttttcattg 14140296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 7121516 - 7121473
Alignment:
Q  173 aataacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    |||||||| ||||||||||||||||||||  |||||||||||||    
T  7121516 aataacttttgtgacaacttcttttttcttacttttcattgatc 7121473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 324
Target Start/End: Complemental strand, 12065950 - 12065920
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcattt 324  Q
    |||||||||||||||||||||||||||||||    
T  12065950 ttgttacaaagtggttgtacaaatatcattt 12065920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 12066053 - 12066023
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  12066053 gtgacaacttcttttttctctcttttcattg 12066023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 14714131 - 14714097
Alignment:
Q  182 tgtgacaacttcttttttctctcttttcattgatc 216  Q
    |||||||||||||||| ||||||||||||||||||    
T  14714131 tgtgacaacttcttttctctctcttttcattgatc 14714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 36435714 - 36435677
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttcttcaaa 331  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  36435714 ttgtcacaaagtggttgtacaaatatcatttctccaaa 36435677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 43650467 - 43650504
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  43650467 aacttatgtgacaatttcttttttctctctttttattg 43650504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 4738610 - 4738642
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  4738610 ttgtcacaaagtggttgtacaaatatcatttct 4738642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 5031956 - 5031924
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  5031956 ttgttacaaaatggttgtacaaatatcatttct 5031924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 5167780 - 5167812
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  5167780 ttgtcacaaagtggttgtacaaatatcatttct 5167812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 6365219 - 6365187
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  6365219 ttgtcacaaagtggttgtacaaatatcatttct 6365187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 15283288 - 15283320
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  15283288 ttgtcacaaagtggttgtacaaatatcatttct 15283320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 17159599 - 17159555
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttcttcaaaaaattat 338  Q
    |||||| ||| | |||||||||||||||||||||| |||||||||    
T  17159599 ttgttaaaaaatagttgtacaaatatcatttcttctaaaaattat 17159555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 30856840 - 30856808
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  30856840 ttgtcacaaagtggttgtacaaatatcatttct 30856808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 33296109 - 33296141
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  33296109 ttgtcacaaagtggttgtacaaatatcatttct 33296141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 36133007 - 36132975
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  36133007 ttgtcacaaagtggttgtacaaatatcatttct 36132975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 41040299 - 41040267
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  41040299 ttgtcacaaagtggttgtacaaatatcatttct 41040267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 42283277 - 42283309
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  42283277 ttgtcacaaagtggttgtacaaatatcatttct 42283309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 44484694 - 44484726
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  44484694 ttgttacaaaatggttgtacaaatatcatttct 44484726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 31502 - 31557
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||   || ||||||||||| ||||||||||||||||||||    
T  31502 gagtagtgatatttgaacaat---ttttgtgacaactttttttttctctcttttcattg 31557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 11362 - 11306
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||  | ||||| ||||||||| ||||||||||||||||||||||    
T  11362 gagtagtgatatttgaa--acaacttttgtgacaacctcttttttctctcttttcattg 11306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 39604164 - 39604203
Alignment:
Q  174 ataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39604164 ataacttatttgacaacttcttttttctctcttttcattg 39604203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 24551150 - 24551184
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||||||    
T  24551150 ttatgtgacaacttcttttttctctcttttcattg 24551184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 5188387 - 5188350
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5188387 aacttttgtgacaacttcttttttctctcttttcattg 5188350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 11173601 - 11173564
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11173601 aacttttgtgacaacttcttttttctctcttttcattg 11173564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 29706054 - 29706017
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29706054 aacttttgtgacaacttcttttttctctcttttcattg 29706017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 35272178 - 35272141
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35272178 aacttatgtgacaacttcttttttctctctttttattg 35272141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 34271528 - 34271560
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||||||||||||||||||||||    
T  34271528 ttgttacaaagtggttgtacaaatatcatttct 34271560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 3483264 - 3483231
Alignment:
Q  182 tgtgacaacttcttttttctctcttttcattgat 215  Q
    ||||||||||| ||||||||||||||||||||||    
T  3483264 tgtgacaactttttttttctctcttttcattgat 3483231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 20380809 - 20380846
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  20380809 aacttttgtgacaacttcttttttctcacttttcattg 20380846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 20380927 - 20380967
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttcttcaaaaaat 335  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  20380927 ttgtcacaaagtggttgtacaaatatcatttc-tcaaaaaat 20380967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 32457683 - 32457712
Alignment:
Q  184 tgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||    
T  32457683 tgacaacttcttttttctctcttttcattg 32457712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 37215151 - 37215188
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  37215151 aacttttgtgacaacttattttttctctcttttcattg 37215188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 37302994 - 37303031
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  37302994 aacttttgtgacaatttcttttttctctcttttcattg 37303031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 46473271 - 46473242
Alignment:
Q  184 tgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||||||||||||    
T  46473271 tgacaacttcttttttctctcttttcattg 46473242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 108464 - 108432
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  108464 ttgtcacaaagtggttgtacaaatatcatttct 108432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 1901964 - 1901996
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  1901964 ttgtcacaaagtggttgtacaaatatcatttct 1901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 1911410 - 1911442
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  1911410 ttgtcacaaagtggttgtacaaatatcatttct 1911442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 5398951 - 5398919
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  5398951 ttgtcacaaagtggttgtacaaatatcatttct 5398919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 12792671 - 12792639
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  12792671 ttgtcacaaagtggttgtacaaatatcatttct 12792639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 14957869 - 14957837
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  14957869 ttgtcacaaagtggttgtacaaatatcatttct 14957837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 18169190 - 18169158
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  18169190 ttgtcacaaagtggttgtacaaatatcatttct 18169158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 20215981 - 20215949
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  20215981 ttgtcacaaagtggttgtacaaatatcatttct 20215949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 29573394 - 29573426
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  29573394 ttgttacaaaatggttgtacaaatatcatttct 29573426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 32536891 - 32536852
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  32536891 aacttatgtgacaactt-ttttctctctcttttcattgatc 32536852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 34607958 - 34607990
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  34607958 ttgtcacaaagtggttgtacaaatatcatttct 34607990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 35272060 - 35272028
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  35272060 ttgtcacaaagtggttgtacaaatatcatttct 35272028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 37303534 - 37303494
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    ||||| |||||||| || |||||||||||||||||||||||    
T  37303534 aacttttgtgacaatttattttttctctcttttcattgatc 37303494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 43176235 - 43176203
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  43176235 ttgtaacaaagtggttgtacaaatatcatttct 43176203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 48945880 - 48945848
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  48945880 ttgtcacaaagtggttgtacaaatatcatttct 48945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 50294044 - 50294084
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  50294044 aacttatttgacaactttctttttctctcttttcattgatc 50294084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 51464310 - 51464342
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  51464310 ttgtcacaaagtggttgtacaaatatcatttct 51464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 49195050 - 49194997
Alignment:
Q  157 gtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||   |||||||||||||||||||| |||||||||| ||||    
T  49195050 gtagtgatatttgaacaa---cttatgtgacaacttcttttctctctctttttattg 49194997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 9162236 - 9162180
Alignment:
Q  155 gagtagtgatatttga-acaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||| |||||   || ||||||||||||||||||||||||||||||||    
T  9162236 gagtagtgatatttgatacaat---ttttgtgacaacttcttttttctctcttttcattg 9162180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 28203562 - 28203513
Alignment:
Q  156 agtagtgatatttgaacaat-aacttatgtgacaacttcttttttctctc 204  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  28203562 agtagtgatatttgaacaaccaacttatttgacaacttcttttttctctc 28203513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 42915139 - 42915176
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  42915139 aacttttgtgacaacttcttttttctctcttttcattg 42915176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 51717204 - 51717241
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||| |||||||||||||||||||||||    
T  51717204 aacttatgtgacaatttcttttttctctcttttcattg 51717241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 51389112 - 51389144
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||||||||||||||||||||||    
T  51389112 ttgttacaaagtggttgtacaaatatcatttct 51389144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 51389467 - 51389431
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcatt 212  Q
    ||||| |||||||||||||||||||||||||||||||    
T  51389467 aacttttgtgacaacttcttttttctctcttttcatt 51389431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 24337274 - 24337313
Alignment:
Q  174 ataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  24337274 ataatttatgtgacagcttcttttttctctcttttcattg 24337313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 46794546 - 46794585
Alignment:
Q  301 aaagtggttgtacaaatatcatttcttcaaaaaattatag 340  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  46794546 aaagtggttgtacaaatatcatttctccaaaaaaatatag 46794585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 31240792 - 31240762
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  31240792 gtgacaacttcttttttctctcttttcattg 31240762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 48372153 - 48372183
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||||||||||||    
T  48372153 gtgacaacttcttttttctctcttttcattg 48372183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 4896420 - 4896457
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  4896420 aacttttgtgacaacctcttttttctctcttttcattg 4896457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 31275297 - 31275260
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  31275297 aacttttgtgacaatttcttttttctctcttttcattg 31275260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 34116463 - 34116500
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  34116463 ttatgtgacaactttttttttctctcttttcatcgatc 34116500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 35580261 - 35580224
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  35580261 aacttatgtgacaacttttttttcctctcttttcattg 35580224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 53091260 - 53091289
Alignment:
Q  297 ttacaaagtggttgtacaaatatcatttct 326  Q
    ||||||||||||||||||||||||||||||    
T  53091260 ttacaaagtggttgtacaaatatcatttct 53091289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 4896538 - 4896570
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  4896538 ttgtcacaaagtggttgtacaaatatcatttct 4896570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 6371013 - 6370981
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  6371013 ttgtcacaaagtggttgtacaaatatcatttct 6370981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 11064127 - 11064159
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  11064127 ttgtcacaaagtggttgtacaaatatcatttct 11064159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 11997718 - 11997686
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  11997718 ttgtcacaaagtggttgtacaaatatcatttct 11997686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 12638858 - 12638826
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||| ||||||||||||||||||||    
T  12638858 ttgttacaaagtagttgtacaaatatcatttct 12638826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 15596429 - 15596397
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  15596429 ttgtcacaaagtggttgtacaaatatcatttct 15596397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 25725732 - 25725764
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  25725732 ttgttagaaagtggttgtacaaatatcatttct 25725764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 26440709 - 26440677
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  26440709 ttgtcacaaagtggttgtacaaatatcatttct 26440677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 26885324 - 26885292
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  26885324 ttgtcacaaagtggttgtacaaatatcatttct 26885292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 34116578 - 34116610
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  34116578 ttgtcacaaagtggttgtacaaatatcatttct 34116610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 35017304 - 35017264
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  35017304 aacttaggtgacaattttttttttctctcttttcattgatc 35017264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 35908448 - 35908416
Alignment:
Q  295 tgttacaaagtggttgtacaaatatcatttctt 327  Q
    ||||| |||||||||||||||||||||||||||    
T  35908448 tgttaaaaagtggttgtacaaatatcatttctt 35908416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 37547098 - 37547066
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  37547098 ttgtcacaaagtggttgtacaaatatcatttct 37547066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 38160693 - 38160729
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcatt 212  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  38160693 aacttatgtgacaacttattttttctcttttttcatt 38160729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 41119508 - 41119540
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  41119508 ttgtcacaaagtggttgtacaaatatcatttct 41119540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 41952972 - 41952940
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattgat 215  Q
    |||||||||| ||||||||||||||||||||||    
T  41952972 gtgacaactttttttttctctcttttcattgat 41952940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 45257209 - 45257241
Alignment:
Q  301 aaagtggttgtacaaatatcatttcttcaaaaa 333  Q
    |||||| ||||||||||||||||||||||||||    
T  45257209 aaagtgattgtacaaatatcatttcttcaaaaa 45257241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 46173583 - 46173551
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  46173583 ttgtcacaaagtggttgtacaaatatcatttct 46173551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 47288115 - 47288083
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  47288115 ttgttacaaaatggttgtacaaatatcatttct 47288083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 47998627 - 47998595
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  47998627 ttgttacaaaatggttgtacaaatatcatttct 47998595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 2790328 - 2790291
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2790328 aacttatgtgacaacttcttttctctctcttttcattg 2790291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 28861998 - 28862052
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcat 211  Q
    ||||||||||||||||||||| | ||  |||||||||||||||||| ||||||||||    
T  28861998 gagtagtgatatttgaacaatcattt--gtgacaacttcttttttccctcttttcat 28862052  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 2790210 - 2790178
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||||||||||||||||||||||    
T  2790210 ttgttacaaagtggttgtacaaatatcatttct 2790178  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 30941211 - 30941179
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||||||||||||||||||||||    
T  30941211 ttgttacaaagtggttgtacaaatatcatttct 30941179  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 39875732 - 39875766
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||| |||||||||||||||||||||||    
T  39875732 ttatgtgacaatttcttttttctctcttttcattg 39875766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 12102629 - 12102666
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  12102629 aacttttgtgacaacttattttttctctcttttcattg 12102666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 33684831 - 33684794
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  33684831 aacttttgtgacaacttcttttttctatcttttcattg 33684794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 42942420 - 42942449
Alignment:
Q  297 ttacaaagtggttgtacaaatatcatttct 326  Q
    ||||||||||||||||||||||||||||||    
T  42942420 ttacaaagtggttgtacaaatatcatttct 42942449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 43025978 - 43025924
Alignment:
Q  154 tgagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttca 210  Q
    |||||||||||||||||   | ||||| ||| |||||||||||||||||||||||||    
T  43025978 tgagtagtgatatttgat--acaacttttgtaacaacttcttttttctctcttttca 43025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 2469736 - 2469704
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  2469736 ttgtcacaaagtggttgtacaaatatcatttct 2469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 8459647 - 8459615
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  8459647 ttgttaaaaagtggttgtacaaatatcatttct 8459615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 19510277 - 19510317
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattgatc 216  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  19510277 aacttttgtaacaacttattttttctctcttttcattgatc 19510317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 22330658 - 22330690
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  22330658 ttgtcacaaagtggttgtacaaatatcatttct 22330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 25940670 - 25940702
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  25940670 ttgttacaaaatggttgtacaaatatcatttct 25940702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 31982090 - 31982058
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  31982090 ttgtcacaaagtggttgtacaaatatcatttct 31982058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 37352017 - 37352049
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  37352017 ttgtcacaaagtggttgtacaaatatcatttct 37352049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 41966365 - 41966333
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  41966365 ttgtcacaaagtggttgtacaaatatcatttct 41966333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 43213352 - 43213320
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  43213352 ttgttagaaagtggttgtacaaatatcatttct 43213320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 43444661 - 43444629
Alignment:
Q  301 aaagtggttgtacaaatatcatttcttcaaaaa 333  Q
    |||||||||||||||||||||||||| ||||||    
T  43444661 aaagtggttgtacaaatatcatttctccaaaaa 43444629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 45432094 - 45432062
Alignment:
Q  176 aacttatgtgacaacttcttttttctctctttt 208  Q
    |||||||||||||||||||||||||||| ||||    
T  45432094 aacttatgtgacaacttcttttttctctttttt 45432062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 46829512 - 46829480
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  46829512 ttgttacaaaatggttgtacaaatatcatttct 46829480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 48314399 - 48314431
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  48314399 ttgttaaaaagtggttgtacaaatatcatttct 48314431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 48866850 - 48866886
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcatt 212  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  48866850 aacttttgtgacaacctcttttttctctcttttcatt 48866886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 22389445 - 22389482
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  22389445 aacttttgtgacaacttcttttttctctcttttcattg 22389482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 50659112 - 50659149
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||||||||| |||||||||||||||    
T  50659112 aacttatgtgacaacttcttttctctctcttttcattg 50659149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 16836016 - 16836071
Alignment:
Q  155 gagtagtgatatttgaacaataacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||||   ||| ||||||||||||||||||||  ||||||||||    
T  16836016 gagtagtgatatttgaacaa---cttttgtgacaacttcttttttcttacttttcattg 16836071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 25098826 - 25098858
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||||||||||||||||||||||    
T  25098826 ttgttacaaagtggttgtacaaatatcatttct 25098858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 51339738 - 51339769
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttc 325  Q
    ||||||||||||||||||||||||||||||||    
T  51339738 ttgttacaaagtggttgtacaaatatcatttc 51339769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 25302568 - 25302602
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||| ||||||||||||||||||||    
T  25302568 ttatgtgacaactttttttttctctcttttcattg 25302602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 34187412 - 34187378
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    |||||||||||||||| ||||||||||||||||||    
T  34187412 ttatgtgacaacttctcttttctctcttttcattg 34187378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 366808 - 366771
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  366808 aacttatgtgacaacttttttttcctctcttttcattg 366771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 5477083 - 5477120
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  5477083 aacttttgtgacaacttcttttttctctctttttattg 5477120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 36418230 - 36418193
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  36418230 aacttttgtgacaacttcttttctctctcttttcattg 36418193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 37690566 - 37690529
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  37690566 aacttttgtgacaacttcttttctctctcttttcattg 37690529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 39010965 - 39010928
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  39010965 aacttttgtgacaacttattttttctctcttttcattg 39010928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 40610380 - 40610343
Alignment:
Q  176 aacttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  40610380 aacttttgtgacaacttcttttctctctcttttcattg 40610343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 5309078 - 5309110
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  5309078 ttgtcacaaagtggttgtacaaatatcatttct 5309110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 14983817 - 14983785
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||| ||||||||||||||||||||||||||    
T  14983817 ttgttaaaaagtggttgtacaaatatcatttct 14983785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 15466791 - 15466759
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||||||| ||||||||||||||||||    
T  15466791 ttgttacaaagtggatgtacaaatatcatttct 15466759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 21433439 - 21433471
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  21433439 ttgttacaaaatggttgtacaaatatcatttct 21433471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 25302681 - 25302713
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  25302681 ttgtcacaaagtggttgtacaaatatcatttct 25302713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 31427995 - 31428027
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  31427995 ttgtcacaaagtggttgtacaaatatcatttct 31428027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 32821668 - 32821636
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  32821668 ttgtcacaaagtggttgtacaaatatcatttct 32821636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 32966300 - 32966268
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  32966300 ttgtcacaaagtggttgtacaaatatcatttct 32966268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 45740582 - 45740614
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  45740582 ttgtcacaaagtggttgtacaaatatcatttct 45740614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 49425771 - 49425739
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  49425771 ttgtcacaaagtggttgtacaaatatcatttct 49425739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 49453524 - 49453492
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  49453524 ttgtcacaaagtggttgtacaaatatcatttct 49453492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 50226917 - 50226949
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  50226917 ttgtcacaaagtggttgtacaaatatcatttct 50226949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 219587 - 219621
Alignment:
Q  179 ttatgtgacaacttcttttttctctcttttcattg 213  Q
    ||||||||||||||||||| |||||||||||||||    
T  219587 ttatgtgacaacttcttttctctctcttttcattg 219621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 219702 - 219734
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  219702 ttgtcacaaagtggttgtacaaatatcatttct 219734  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 6571 - 6538
Alignment:
Q  183 gtgacaacttcttttttctctcttttcattgatc 216  Q
    |||| |||||||||||||||||||||||||||||    
T  6571 gtgataacttcttttttctctcttttcattgatc 6538  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 16632 - 16664
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  16632 ttgttacaaaatggttgtacaaatatcatttct 16664  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 15572 - 15604
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  15572 ttgtcacaaagtggttgtacaaatatcatttct 15604  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 56212 - 56180
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  56212 ttgttacaaaatggttgtacaaatatcatttct 56180  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 72207 - 72239
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||||||||| ||||||||||||||||||||||    
T  72207 ttgttacaaaatggttgtacaaatatcatttct 72239  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 113658 - 113626
Alignment:
Q  294 ttgttacaaagtggttgtacaaatatcatttct 326  Q
    |||| ||||||||||||||||||||||||||||    
T  113658 ttgtcacaaagtggttgtacaaatatcatttct 113626  T

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