View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4535-Insertion-6 (Length: 585)
Name: NF4535-Insertion-6
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-6 |
 | |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 570; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Original strand, 40566313 - 40566890
Alignment:
| Q |
8 |
gcatggccagtagccagcgattgctacgcagaaaagggcagattcatataccaaacgctgcgggatatgaacatgacacatttttacatctctccaactc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
40566313 |
gcatggccagtagccagcgattgctacgcagaaaagggcagattcatataccaaacgctgcgggatatgaacatgacacatttttacatctcgccaactc |
40566412 |
T |
|
| Q |
108 |
gaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctgggggaaacaactacaccacaggatgtgtggctttatgcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40566413 |
gaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctgggggaaacaactacaccacaggatgtgtggctttatgcaa |
40566512 |
T |
|
| Q |
208 |
caggcttgatgatattatggccaatcaatcttgctcaggtactggttgttgcgagatttcaataccccaaggtcgtgtgttgagagaagtggcctatact |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40566513 |
caggcttgatgatattatggccagtcaatcttgctcaggtactggttgttgcgagatttcaataccccaaggtcgtgtgttgagagaagtggcctatact |
40566612 |
T |
|
| Q |
308 |
tctgcaggtatattcaacaatcactcagacgtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40566613 |
tctgcaggtatattcaacaatcactcagacgtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacag |
40566712 |
T |
|
| Q |
408 |
acctccttgagttaaagaagaaggagtttcctgtgttgttcgactgggcagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40566713 |
acctccttgagttaaagaagaaggagtttcctgtgttgttcgactgggcagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgc |
40566812 |
T |
|
| Q |
508 |
atgtaaggccagcaaaagtacatgttacaattcagccgagagatctggctacctttgtagatgtgtgcatggatatcg |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40566813 |
atgtaaggccagcaaaagtacatgttacaattcagccgagagatctggctacctttgtagatgtgtgcatggatatcg |
40566890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 71 - 534
Target Start/End: Original strand, 40595756 - 40596222
Alignment:
| Q |
71 |
gatatgaacatgacacatttttacatctctccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctgggg |
170 |
Q |
| |
|
||||| || ||| |||||||| || |||| ||||||| ||||||||||| ||||||||| |||||||| || ||| |||| || ||||||||| | |
|
|
| T |
40595756 |
gatatcaagatgccacattttcacgtctcgccaactcaaaacaagttgatagcagttggatgtgacacaatgggactactcgaagcaattgattctaaag |
40595855 |
T |
|
| Q |
171 |
gaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccaatcaatcttgctcaggtactggttgttgcgagatttcaat |
270 |
Q |
| |
|
|||||| |||||||| | ||||||||| || |||||||||||| ||||||| |||||||| ||||||| || || | |||||||| ||||||||||| |
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|
| T |
40595856 |
gaaacacatacaccactgcatgtgtggccttgtgcaacaggcttagtgatattgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaat |
40595955 |
T |
|
| Q |
271 |
accccaaggtcgtgtgttgagagaagtggcctatacttctgcaggtatattcaacaatcactcagac----gtacatgatttcaatccctgtggttattc |
366 |
Q |
| |
|
|||| ||||||||||||| | ||||| ||||||| ||||| | ||| |||||| | |||| | ||||| |||||||| ||||||||| | |
|
|
| T |
40595956 |
acccaaaggtcgtgtgtttacggaagttgcctatatttctgaacacggattgaacaataa-tcaggcattagtacagcccttcaatccatgtggttatac |
40596054 |
T |
|
| Q |
367 |
ttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactgggcagtagggaac |
466 |
Q |
| |
|
||| |||| ||||||||||||||| |||| | | ||||||||||| || ||||||||| | | |||||||||||||| |||||||||||||||||| |
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|
| T |
40596055 |
gtttttggtggaaaatggagcctaccgctttgcaatcacagacctccaaaagctaaagaagaggaactttcctgtgttgttggactgggcagtagggaac |
40596154 |
T |
|
| Q |
467 |
caaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgtta |
534 |
Q |
| |
|
||||| |||||||| |||| ||| |||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
40596155 |
caaacgtgccagcaagctcggaaggatctttccacttatgcatgtaaggcagacaaaagtaaatgtta |
40596222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 356 - 535
Target Start/End: Original strand, 40600679 - 40600855
Alignment:
| Q |
356 |
tgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactggg |
455 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||| |||| || || |||||||||||||||||||| ||||||| |
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|
| T |
40600679 |
tgtggttatgcttttgtggttgaatatggagcctacagcttcaattccacagacctca---agttgaataacaaggagtttcctgtgttgttggactggg |
40600775 |
T |
|
| Q |
456 |
cagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttac |
535 |
Q |
| |
|
|||||||||||||||| || || || |||||||| |||||||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
40600776 |
cagtagggaaccaaacttgtcatcaagctcagaaggatctttccacttatgcgtgtaaggccgacaaaagtacatgttac |
40600855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 160 - 535
Target Start/End: Original strand, 40577578 - 40577959
Alignment:
| Q |
160 |
tgattctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccaatcaatcttgctcaggtactggttgttgc |
259 |
Q |
| |
|
|||||||| || ||| | |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||| |||||| || |
|
|
| T |
40577578 |
tgattctgaggaaaaaacctacgccacaggatgtgtggctttctgcaacaggcttgatgatatcgaagccaatcaaccttgctctggtattggttgctgt |
40577677 |
T |
|
| Q |
260 |
gagatttcaataccccaaggtcgtgtgttgagagaagtggcctata---cttctgcaggtatattcaacaatca------ctcagacgtacatgatttca |
350 |
Q |
| |
|
|||| ||||||||||| ||||| |||| | |||||||||| |||||| ||| |||| ||||||| |||| | |||||||| |||| |
|
|
| T |
40577678 |
gagagttcaatacccccaggtcagatgttaacgcgagtggcctatggttcttctggaggcgtattttacaatcaaagtgactcaaaagtacatgacttca |
40577777 |
T |
|
| Q |
351 |
atccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatcca-cagacctccttgagttaaagaagaaggagtttcctgtgttgttcg |
449 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||| ||||||||| || | | |||||||| | ||| | |||||||||||||||||||||||| | |
|
|
| T |
40577778 |
atccatgtggttattcttttttggttgcaaatggaaactacagctt-gacacgatcagacctcat---gttgatgaagaaggagtttcctgtgttgttgg |
40577873 |
T |
|
| Q |
450 |
actgggcagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttac |
535 |
Q |
| |
|
||||| |||||| || |||||||||| ||| |||||||| ||| |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
40577874 |
actggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttac |
40577959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 70 - 535
Target Start/End: Original strand, 40571062 - 40571536
Alignment:
| Q |
70 |
ggatatgaacatgacacatttttacatctctccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctggg |
169 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||||| ||||||||||| ||||||||| ||||||||| | |||| | | || |||||||||| |
|
|
| T |
40571062 |
ggatatcaacatgacacattttcacatctcgccaactaaaaacaagttgatagcagttggttgtgacacggtgggagtattagaagcagctgattctggg |
40571161 |
T |
|
| Q |
170 |
ggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccaatcaatcttgctcaggtactggttgttgcgagatttcaa |
269 |
Q |
| |
|
|||| | |||| ||||||||||||| |||| ||||||| | | ||||||| | ||||||||| ||||||| |||| |||||| || |||||| | |
|
|
| T |
40571162 |
cgaaaaacctacgccacaggatgtgttgcttactgcaacaatcgtactgatattgtcgccaatcaaccttgctctggtattggttgctgtgagattcaat |
40571261 |
T |
|
| Q |
270 |
taccccaaggtcgtgtgttgagagaagtggcctatacttct---gcaggtatattcaacaatca------ctcagacgtacatgatttcaatccctgtgg |
360 |
Q |
| |
|
||||||||| || |||| | |||| |||| |||| | ||| ||||| ||||||| |||| | |||||||| |||||||| ||||| |
|
|
| T |
40571262 |
taccccaagttcacatgttaacgcgagtgctctatggttcttatggaggcatattttacaatcaaagtcactcaaaagtacatgacttcaatccatgtgg |
40571361 |
T |
|
| Q |
361 |
ttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactgggcagta |
460 |
Q |
| |
|
||| ||||| || ||||||||||| |||||||||| | |||||||||| |||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
40571362 |
ctatgcttttttgattgaaaatggatcctacagcttaacacgatcagacctcctcaagttgaagaataaggagtttcctgtgttgttgaactggacagta |
40571461 |
T |
|
| Q |
461 |
gggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttac |
535 |
Q |
| |
|
|| ||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40571462 |
ggaaaccaaacatgcctgcaagctcagaagaatcttttcaattatgcatgtaaggccgagaaaagtacatgttac |
40571536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 328 - 498
Target Start/End: Original strand, 40589606 - 40589776
Alignment:
| Q |
328 |
tcactcagacgtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaag |
427 |
Q |
| |
|
|||||||| ||| |||| |||||||| ||||||||| |||| | ||||||||||||| ||||| |||| | |||||||||||| || |||||||| |
|
|
| T |
40589606 |
tcactcagcagtatatgacttcaatccgtgtggttatgtttttattgttgaaaatggagactacattttcgcaaccacagacctccccaagctaaagaag |
40589705 |
T |
|
| Q |
428 |
aaggagtttcctgtgttgttcgactgggcagtagggaaccaaacatgccagcatgctcagaatgatctttc |
498 |
Q |
| |
|
||| | |||||||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||||||| |
|
|
| T |
40589706 |
aagaactttcctgtgttgttggactgggcagtaggaaaccaaacctgtcagcaagctcagaaggatctttc |
40589776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 77 - 288
Target Start/End: Original strand, 40589358 - 40589569
Alignment:
| Q |
77 |
aacatgacacatttttacatctctccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctgggggaaaca |
176 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||| || |||| |||| | |||||||||| ||||||| |
|
|
| T |
40589358 |
aacatgacacattttcacctctctcccactcgaaacaagttggtagcagttggctgtgatacatctggaatactcggagtaattgattctgaaggaaaca |
40589457 |
T |
|
| Q |
177 |
actacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccaatcaatcttgctcaggtactggttgttgcgagatttcaatacccca |
276 |
Q |
| |
|
|||||||| | |||||| |||||| |||||||||| | |||| | | |||||| | ||||| || ||| ||||||||||| ||||||| ||||||| |
|
|
| T |
40589458 |
actacacctctggatgtttggcttggtgcaacaggcacgctgatctcgttgccaatgagtcttgttctggtcctggttgttgccagatttcggtacccca |
40589557 |
T |
|
| Q |
277 |
aggtcgtgtgtt |
288 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40589558 |
aggtcgtgtgtt |
40589569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 80 - 583
Target Start/End: Complemental strand, 2017289 - 2016786
Alignment:
| Q |
80 |
atgacacatttttacatctctccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattgattctgggggaaacaact |
179 |
Q |
| |
|
|||||||||||| | |||| |||| ||||||||||| || ||||||||||||||||||| | |||| | || |||||| |||||||||||||| |
|
|
| T |
2017289 |
atgacacattttcccgtctcatcaacacgaaacaagtttgttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaact |
2017190 |
T |
|
| Q |
180 |
acaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccaatcaatcttgctcaggtactggttgttgcgagatttcaataccccaagg |
279 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||| || ||||||| |||||||| |||||||||| || ||||||||||| ||||||||||||| ||||| |
|
|
| T |
2017189 |
acaccacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaagg |
2017090 |
T |
|
| Q |
280 |
tcgtgtgtt-gagagaagtggcctatacttctgcaggtatattcaacaatcactcagacgtacatgatttcaatccctgtggttattcttttgtggttga |
378 |
Q |
| |
|
|| | |||| |||| ||||| ||| | | ||| |||| ||||||||||||||||| |||||||| |||||||| ||||||||| ||||| | ||||| |
|
|
| T |
2017089 |
tcatttgttcgaga-aagtgtcctttgttactgtaggtgcattcaacaatcactcagcagtacatgacttcaatccttgtggttatgctttttttgttga |
2016991 |
T |
|
| Q |
379 |
aaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactgggcagtagggaaccaaacatgccag |
478 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
2016990 |
aaatggagcctacactttcgaatccacggacctcctcaagttggagaagaaggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccag |
2016891 |
T |
|
| Q |
479 |
catgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcagccgagagatctggctacctttgtagatgtgtgcatg |
578 |
Q |
| |
|
|| |||||||| |||||| | |||||||| ||||||| || ||||||||||||||||||| || | |||| |||||| |||||||| ||||| | |||| |
|
|
| T |
2016890 |
caagctcagaaggatcttgcaaattatgcctgtaaggacaacaaaagtacatgttacaatccacctgagaaatctggttacctttgcagatgccttcatg |
2016791 |
T |
|
| Q |
579 |
gatat |
583 |
Q |
| |
|
||||| |
|
|
| T |
2016790 |
gatat |
2016786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 8490736 - 8490797
Alignment:
| Q |
77 |
aacatgacacatttttacatctctccaactcgaaacaagttgacagcagttggctgtgacac |
138 |
Q |
| |
|
|||||||||||| || | ||||| ||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
8490736 |
aacatgacacatcttcaaatctcaccaaccggaaacaagttgatagcagttggttgtgacac |
8490797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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