View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535-Insertion-8 (Length: 418)
Name: NF4535-Insertion-8
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 225 - 418
Target Start/End: Complemental strand, 2154331 - 2154137
Alignment:
| Q |
225 |
tactagctttttcaaacaaattttcatactttaattgttttaattttactt--ctcagataaatgtaaagaatatagtcattttcatttgcggtgatatt |
322 |
Q |
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| T |
2154331 |
tactagctttttcaaacaaattttcatactttaattgttttaattttttttttctcagataaatgtaaagaatatagtcattttcatttgcggtgatatt |
2154232 |
T |
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| Q |
323 |
tgtttttgtgtgatgcacttattgatactatagannnnnnnngtgtcgacatttattcattcaagttacgtccttagtggaataccaaaccccacc |
418 |
Q |
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| T |
2154231 |
tgtttttgtgtgatgcacttattgatactataga-tttttttgtgtcgacatttattcattcaagttacgtccttagtggaataccaaaccccacc |
2154137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 2154508 - 2154327
Alignment:
| Q |
8 |
gcttccaatattggagaagacaggttgctcctaagaagtcatttaattttttatggtaacataaaaatatcattttctgggccccttgtaaaactcagaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2154508 |
gcttccaatattggagaagacaggttgctcctaagaagtcattaaattttttatggtaacataaaaatatcattttctggggcccttgtaaaactcagaa |
2154409 |
T |
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| Q |
108 |
agcaatcacattcattggttcagatgttttcaacaannnnnnnnnataacaagttaaaataacacaaactatttgatatacta |
190 |
Q |
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| T |
2154408 |
agcaatcacattcattggttcagatgttttcaac-atttttttttttaacaagttaaaataacacaaactatttgatatacta |
2154327 |
T |
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