View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535_high_2 (Length: 393)
Name: NF4535_high_2
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 27984371 - 27984734
Alignment:
| Q |
21 |
atgtataaggcttcaggtccagttccttagagaaatcgacatatttgtcaannnnnnnaactgagtctccatcttttagaaaccttttcaaatgaaatgc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984371 |
atgtataaggcttcaggtccagttccttagagaaatcgacatatttatcaatttttttaactgagtctccatcttttagaaaccttttcaaatgaaatgc |
27984470 |
T |
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| Q |
121 |
tgcaactgaaggagctttataaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttccatccatcttttctaccttg |
220 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984471 |
tgcaactgaaggagctttatcaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttccatccatcttttctaccttg |
27984570 |
T |
|
| Q |
221 |
gtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatcagaagagtgaccacagcagc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984571 |
gtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatcagaagagtgaccacagcagc |
27984670 |
T |
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| Q |
321 |
aacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984671 |
aacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
27984734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 28041673 - 28042036
Alignment:
| Q |
21 |
atgtataaggcttcaggtccagttccttagagaaatcgacatatttgtcaannnnnnnaactgagtctccatcttttagaaaccttttcaaatgaaatgc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041673 |
atgtataaggcttcaggtccagttccttagagaaatcgacatatttatcaatttttttaactgagtctccatcttttagaaaccttttcaaatgaaatgc |
28041772 |
T |
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| Q |
121 |
tgcaactgaaggagctttataaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttccatccatcttttctaccttg |
220 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041773 |
tgcaactgaaggagctttatcaagcataagctgtttttccatagttacttcttggttgcagtcactacaaataaactttccatccatcttttctaccttg |
28041872 |
T |
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| Q |
221 |
gtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatcagaagagtgaccacagcagc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041873 |
gtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaatggctcaaatttatcagaagagtgaccacagcagc |
28041972 |
T |
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| Q |
321 |
aacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041973 |
aacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaataat |
28042036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 86 - 383
Target Start/End: Original strand, 27239009 - 27239309
Alignment:
| Q |
86 |
tctccatcttttagaaaccttttcaaatgaaatgctgcaactgaaggagctttataaagcataagctgtttttccatagttacttcttggttgcagtcac |
185 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
27239009 |
tctccatcttttagaaaccttttcaaatgaaatactgcaattgaaggagctttatcaagcataagctgtttttccatagttacctcttggttgcagttgc |
27239108 |
T |
|
| Q |
186 |
tacaaataaactttccatccatcttttctaccttggtgaaagattccagagcctgctgaatggtactcacatgttctatctctaaactcatgtcgatcaa |
285 |
Q |
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| || ||||||||||| ||| || ||||||| |||||| ||||| |||||| ||| ||||| | | || |||||||||||||||||||||| | || |
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| T |
27239109 |
tgcatctaaactttccagccagctgttctaccctggtgatagatttcagagcatgcggaatgcttgccgcaagttctatctctaaactcatgtccttaaa |
27239208 |
T |
|
| Q |
286 |
tggctcaaatttatcagaagagtgacc---acagcagcaacatcgaagctgaataataacaaacatcaatacaagataaaattaaaatcatcggagaata |
382 |
Q |
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|||| ||||| || | ||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27239209 |
tggcacaaatgtagccgaagagtaaccacgacagcagcaacatcgaaactgagtaataacaaacatcaatacaagataaaattaaaatcatcggagaata |
27239308 |
T |
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| Q |
383 |
a |
383 |
Q |
| |
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| |
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| T |
27239309 |
a |
27239309 |
T |
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