View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535_high_3 (Length: 251)
Name: NF4535_high_3
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 1738234 - 1738047
Alignment:
| Q |
47 |
ttatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa |
146 |
Q |
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| T |
1738234 |
ttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa |
1738135 |
T |
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| Q |
147 |
actaaacaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgta |
233 |
Q |
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| T |
1738134 |
actaaacaaaaataaataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggcagtatgtagatctagtagtgta |
1738047 |
T |
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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 246
Target Start/End: Complemental strand, 1716829 - 1716634
Alignment:
| Q |
64 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa------------actaa |
151 |
Q |
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| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
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| Q |
152 |
acaaaaataa-taaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatctt |
246 |
Q |
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| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatctt |
1716634 |
T |
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