View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535_high_7 (Length: 234)
Name: NF4535_high_7
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 35709839 - 35710052
Alignment:
| Q |
11 |
caaaggataataatatatagaactgttgaccatgatataacnnnnnnnnncagcattgggattgaataaggtcttggttcgaattgcccacatcattaga |
110 |
Q |
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| T |
35709839 |
caaaggata-taatatatagaactgttgaccatgatataacgaaaaaaa-cagcattgggattgaataaggtcttggttcgaattgcccatatcattaga |
35709936 |
T |
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| Q |
111 |
cagctaagcttgcgacaacaaaaatgacaacgcagcgtacaacaataagccaaaatacataattaaaaacacttgaatga------aaaggaacaacaga |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
35709937 |
cagctaagtttgcgacaacaaaaatgacaacgcagcgtacaacaataagccaaaatacataattaaaaacacttgacttaagcttgaaaggaacaacaga |
35710036 |
T |
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| Q |
205 |
tggaacattatttcac |
220 |
Q |
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|||||||||||||||| |
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| T |
35710037 |
tggaacattatttcac |
35710052 |
T |
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