View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4535_low_1 (Length: 496)

Name: NF4535_low_1
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4535_low_1
NF4535_low_1
[»] chr1 (8 HSPs)
chr1 (21-403)||(34371752-34372133)
chr1 (403-485)||(6427315-6427397)
chr1 (357-403)||(25934655-25934701)
chr1 (365-403)||(44482269-44482307)
chr1 (415-470)||(9629924-9629979)
chr1 (309-403)||(9828083-9828175)
chr1 (365-403)||(25361925-25361963)
chr1 (403-447)||(17425105-17425149)
[»] chr2 (10 HSPs)
chr2 (365-485)||(6045898-6046010)
chr2 (356-403)||(35056907-35056954)
chr2 (403-452)||(34691817-34691866)
chr2 (403-452)||(34714229-34714278)
chr2 (356-403)||(44860359-44860406)
chr2 (357-403)||(28524465-28524511)
chr2 (365-403)||(34784964-34785002)
chr2 (357-403)||(36096349-36096395)
chr2 (403-479)||(23717997-23718073)
chr2 (403-479)||(24105669-24105745)
[»] chr6 (9 HSPs)
chr6 (356-403)||(10294146-10294193)
chr6 (357-403)||(16488564-16488610)
chr6 (403-470)||(30866156-30866223)
chr6 (355-403)||(9195726-9195774)
chr6 (417-447)||(13689518-13689548)
chr6 (365-403)||(18367875-18367913)
chr6 (366-403)||(34384958-34384995)
chr6 (354-406)||(11424682-11424734)
chr6 (367-403)||(28862161-28862197)
[»] chr5 (12 HSPs)
chr5 (357-403)||(21814300-21814346)
chr5 (357-403)||(6401537-6401583)
chr5 (354-403)||(11685978-11686026)
chr5 (356-403)||(21542069-21542116)
chr5 (356-399)||(36642735-36642778)
chr5 (364-403)||(37328825-37328864)
chr5 (357-403)||(18592112-18592158)
chr5 (354-403)||(3966542-3966591)
chr5 (356-393)||(21522799-21522836)
chr5 (356-393)||(21533365-21533402)
chr5 (403-447)||(3966506-3966550)
chr5 (403-447)||(32766955-32766999)
[»] chr4 (13 HSPs)
chr4 (362-398)||(5225592-5225628)
chr4 (367-405)||(44132628-44132666)
chr4 (403-444)||(35952629-35952670)
chr4 (357-405)||(847988-848036)
chr4 (367-447)||(1747215-1747297)
chr4 (356-403)||(22234863-22234910)
chr4 (356-403)||(30982851-30982898)
chr4 (357-403)||(5414146-5414192)
chr4 (357-403)||(46083965-46084011)
chr4 (403-447)||(3712521-3712565)
chr4 (368-404)||(4100002-4100038)
chr4 (312-403)||(19312374-19312463)
chr4 (414-470)||(20521872-20521928)
[»] scaffold0316 (1 HSPs)
scaffold0316 (330-396)||(16180-16244)
[»] scaffold0003 (1 HSPs)
scaffold0003 (356-403)||(241633-241680)
[»] scaffold0036 (1 HSPs)
scaffold0036 (365-403)||(9729-9767)
[»] chr8 (7 HSPs)
chr8 (365-403)||(15816111-15816149)
chr8 (322-406)||(22652012-22652094)
chr8 (360-403)||(25172675-25172718)
chr8 (373-403)||(11927076-11927106)
chr8 (357-403)||(26902149-26902195)
chr8 (403-444)||(12606841-12606882)
chr8 (360-388)||(41831923-41831951)
[»] chr7 (3 HSPs)
chr7 (367-403)||(6630896-6630932)
chr7 (356-403)||(26329355-26329402)
chr7 (373-405)||(19206087-19206119)
[»] chr3 (5 HSPs)
chr3 (368-403)||(8039820-8039855)
chr3 (357-403)||(11665983-11666029)
chr3 (367-405)||(28678340-28678378)
chr3 (356-394)||(28812563-28812601)
chr3 (357-397)||(25064952-25064992)
[»] scaffold0623 (1 HSPs)
scaffold0623 (357-403)||(5970-6016)
[»] scaffold0450 (1 HSPs)
scaffold0450 (356-393)||(8608-8645)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 403
Target Start/End: Complemental strand, 34372133 - 34371752
Alignment:
Q  21 gacagttctccacaactattcttcttgcttaatcttttgttcttaccttattattgtttggtaatccttttattaatttaatctaaacacttttnnnnnn 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  34372133 gacagttctccacaactattcttcttgcttaatcttttgttcttaccttattattgtttggtaatccttttattaatttaatctaaacacttttaaaaaa 34372034  T
Q  121 ngacacgtatttttaattagtgtctaacagtgtatgtgaagcaaagcaatatcaatgcactataaacttttcaattgtatctaatgatctttctgatttc 220  Q
     ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34372033 -gacacctatttttaattagtgtttaacagtgtatgtgaagcaaagcaatatcaatgcactttaaacttttcaattgtatctaatgatctttctgatttc 34371935  T
Q  221 tttattcattgtaattaaggcctctaatctcactcgtacacttttacacatagagacaacatatatgatctgagccataaactctgagcctatgaaacat 320  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||     
T  34371934 tttattcattgtaattaaggactctaatctcactcgtacacttttacacatagagacaacatataagatctgagccataaactctgagcctatgaagcac 34371835  T
Q  321 agacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    | |||||  | |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  34371834 aaacactttttggatttgacgtgtctcggtatattggacacgtgtcgtatccgacaccaacacgacaccgacacatataatta 34371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 6427397 - 6427315
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtgcttcat 485  Q
    |||||||||| ||||||| | ||||||| |||||||||||||||| | ||  |||| ||||||||| | | ||||||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccgtgcttcat 6427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 25934701 - 25934655
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||||    
T  25934701 gacacgtgtcgtgtccgacaccgacacgataccgacacatataatta 25934655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 44482307 - 44482269
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44482307 tcgtgtccgacaccgacacgacaccgacacatataatta 44482269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 470
Target Start/End: Original strand, 9629924 - 9629979
Alignment:
Q  415 tgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 470  Q
    |||||| |||||||||||||||||||||||||| | | | ||||||||||| ||||    
T  9629924 tgaattatatgattttatcaaattattagcggtgtcgatgtgtcggtgtccatgtc 9629979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 403
Target Start/End: Complemental strand, 9828175 - 9828083
Alignment:
Q  309 cctatgaaacatagacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| ||  |||||| |||||||| |||||||| ||||   | |||||||| ||||||| |||||  |||||||||||||||||| |||||    
T  9828175 cctatgaagcacggacactcctcggattagacgtgtcccggtg--tcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaatta 9828083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 25361963 - 25361925
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25361963 tcgtgtccgacaccgacacgacactgacacatataatta 25361925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 17425105 - 17425149
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggt 447  Q
    |||||||||| ||||||| | ||||||||||||||||||| ||||    
T  17425105 atataattacattgaattatgtgattttatcaaattattatcggt 17425149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 365 - 485
Target Start/End: Original strand, 6045898 - 6046010
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataattatataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtc 464  Q
    ||||||||||||||||||| |||||||||||||||| ||        | ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6045898 tcgtgtccgacaccaacaccacaccgacacatataacta--------ctttgaattgtatgattttatcaaattattagcggtatgggcttgtcggtgtc 6045989  T
Q  465 cgtgtcctctccgtgcttcat 485  Q
    |||||||||||||||||||||    
T  6045990 cgtgtcctctccgtgcttcat 6046010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 35056954 - 35056907
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  35056954 ggacacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 35056907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 34691817 - 34691866
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggtatggg 452  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  34691817 atataattacactgaattatatgattttatcaaattattagcggtatggg 34691866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 34714229 - 34714278
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggtatggg 452  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  34714229 atataattacactgaattatatgattttatcaaattattagcggtatggg 34714278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 44860406 - 44860359
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||    
T  44860406 ggacacatgtcgtgtccaacaccaacacgacaccgacacatataatta 44860359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 28524511 - 28524465
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| | ||||||||||||||||| ||| |||||||||||||||    
T  28524511 gacacgtgttgtgtccgacaccaacacaacaacgacacatataatta 28524465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 34784964 - 34785002
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  34784964 tcgtgtccgataccgacacgacaccgacacatataatta 34785002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 36096349 - 36096395
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||| | |||||||||||||| |||||||||    
T  36096349 gacacgtgtcgtgtccgacatcgacacgacaccgacaaatataatta 36096395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 23718073 - 23717997
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtg 479  Q
    ||||||||||  |||||| | ||| ||| |||||||||||||||| | ||| |||| ||||||||||| | ||||||    
T  23718073 atataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtg 23717997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 24105745 - 24105669
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtg 479  Q
    ||||||||||  |||||| | ||| ||| |||||||||||||||| | ||| |||| ||||||||||| | ||||||    
T  24105745 atataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtg 24105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 10294193 - 10294146
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||    
T  10294193 ggacacatgtcgtgtccgacaccaacacgacaccgacacatataatta 10294146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 16488564 - 16488610
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  16488564 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 16488610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 30866156 - 30866223
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 470  Q
    |||||||||| ||||||| | ||||||| |||||||||||||||| | ||| |||||||||| |||||    
T  30866156 atataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 9195726 - 9195774
Alignment:
Q  355 tggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| | ||||||| |||||| ||||||||||||||||||||||||    
T  9195726 tggacacatgtcgtgtcagacacctacacgacaccgacacatataatta 9195774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 447
Target Start/End: Original strand, 13689518 - 13689548
Alignment:
Q  417 aattgtatgattttatcaaattattagcggt 447  Q
    |||||||||||||||||||||||||||||||    
T  13689518 aattgtatgattttatcaaattattagcggt 13689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 18367913 - 18367875
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  18367913 tcgtgtctgacaccgacacgacaccgacacatataatta 18367875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 34384958 - 34384995
Alignment:
Q  366 cgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  34384958 cgtgtctgacaccaacacgaaaccgacacatataatta 34384995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 11424682 - 11424734
Alignment:
Q  354 ttggacacgtatcgtgtccgacaccaacacgacaccgacacatataattatat 406  Q
    |||||||| | |||||| ||||||| |||| ||||| ||||||||||||||||    
T  11424682 ttggacacatgtcgtgttcgacaccgacacaacaccaacacatataattatat 11424734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 28862197 - 28862161
Alignment:
Q  367 gtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28862197 gtgtcagacaccaacacgacaccgacacatatgatta 28862161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 21814346 - 21814300
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  21814346 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 21814300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 6401583 - 6401537
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||    
T  6401583 gacacgtgtcgtgtccgacactgacacgacaccgacacatataatta 6401537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 11686026 - 11685978
Alignment:
Q  354 ttggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  11686026 ttggacacgtgtcgtgtccgacaccga-acgacaccgacacatataatta 11685978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 21542116 - 21542069
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| |||||||||||||| ||||||||||||||| | ||||||    
T  21542116 ggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaatta 21542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 36642735 - 36642778
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatata 399  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||    
T  36642735 ggacacgtgtcgtgtccgacaccaacatgacaccgacacttata 36642778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 37328825 - 37328864
Alignment:
Q  364 atcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  37328825 atcgtgtccgacaccgacacgacaccgacacatgtaatta 37328864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 18592158 - 18592112
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| | |||||||||||| ||||||||||| ||||||||||||    
T  18592158 gacacgtgttgtgtccgacaccgacacgacaccggcacatataatta 18592112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 3966591 - 3966542
Alignment:
Q  354 ttggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| | | |||||||||||  ||||||||||||||||||||||||    
T  3966591 ttggacacatgttgtgtccgacactgacacgacaccgacacatataatta 3966542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 21522836 - 21522799
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgaca 393  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21522836 ggacacgtgtcgtgtccgacaccgacacgacaccgaca 21522799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 21533402 - 21533365
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgaca 393  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21533402 ggacacgtgtcgtgtccgacaccgacacgacaccgaca 21533365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 3966550 - 3966506
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggt 447  Q
    ||||||||||  |||||||| ||||||| ||||||||||||||||    
T  3966550 atataattacactgaattgtgtgattttctcaaattattagcggt 3966506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 32766955 - 32766999
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggt 447  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||    
T  32766955 atataattacattgaattgtgcgattttctcaaattattagcggt 32766999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 5225592 - 5225628
Alignment:
Q  362 gtatcgtgtccgacaccaacacgacaccgacacatat 398  Q
    |||||||||||||||||||||||||||||||||||||    
T  5225592 gtatcgtgtccgacaccaacacgacaccgacacatat 5225628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 405
Target Start/End: Original strand, 44132628 - 44132666
Alignment:
Q  367 gtgtccgacaccaacacgacaccgacacatataattata 405  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44132628 gtgttcgacaccaacacgacaccgacacatataattata 44132666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 35952629 - 35952670
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagc 444  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  35952629 atataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 848036 - 847988
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataattata 405  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||||    
T  848036 gacacgtttcgtgtccgacaccaacaagacaccgacacttgtaattata 847988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 1747297 - 1747215
Alignment:
Q  367 gtgtccgacaccaacacgacaccgacacatataatta--tataattacgttgaattgtatgattttatcaaattattagcggt 447  Q
    |||| ||||||||||||||||| |||||||||||| |  ||||||||   |||||| | ||||||| |||| |||||||||||    
T  1747297 gtgttcgacaccaacacgacactgacacatataataacgtataattaaactgaattatgtgattttctcaatttattagcggt 1747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 22234863 - 22234910
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| ||||||| |||||| |||||||||||||||||| |||||    
T  22234863 ggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaatta 22234910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 30982851 - 30982898
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| ||||||| |||||| ||||||||||||||| ||||||||    
T  30982851 ggacacgtgtcgtgtctgacaccgacacgacaccgacacttataatta 30982898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 5414146 - 5414192
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||  |||||||||||| |||||||||||    
T  5414146 gacacgtgtcgtgtccgacactgacacgacaccgatacatataatta 5414192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 46083965 - 46084011
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||||||    
T  46083965 gacacgtgtcgtgtccgatactgacacgacaccgacacatataatta 46084011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 3712521 - 3712565
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagcggt 447  Q
    |||||||||| |||||||  |||||||| ||||||||||||||||    
T  3712521 atataattacattgaattacatgattttctcaaattattagcggt 3712565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 4100038 - 4100002
Alignment:
Q  368 tgtccgacaccaacacgacaccgacacatataattat 404  Q
    ||||||||||  |||||||||||||||||||||||||    
T  4100038 tgtccgacacagacacgacaccgacacatataattat 4100002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 19312463 - 19312374
Alignment:
Q  312 atgaaacatagacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||||  |||||| ||| |||| |||||||||||||   | |||||||| |||| ||||||| | |||||||||||| || ||||||||    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtg--tcggacacgtgtcgtatccgacaacgacacgacaccgatacttataatta 19312374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 20521872 - 20521928
Alignment:
Q  414 ttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 470  Q
    ||||||| | ||||||||||||||||||| |||||| ||  |||| |||||||||||    
T  20521872 ttgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtc 20521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 16244 - 16180
Alignment:
Q  330 tcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacat 396  Q
    ||||||| |||||||| ||||   ||||| |||||| ||||||||||||||||||||||||||||||    
T  16244 tcggattagacgtgtcccggtg--ttggatacgtattgtgtccgacaccaacacgacaccgacacat 16180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 241680 - 241633
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||    
T  241680 ggacacgtgtcgtgtccgacaccaacacgacaccgacactcataatta 241633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 9729 - 9767
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  9729 tcgtgtctgacaccaacacgacaccgacacatataatta 9767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 15816111 - 15816149
Alignment:
Q  365 tcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  15816111 tcgtgtccgacaccaacacgacaccgacacttataatta 15816149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 22652094 - 22652012
Alignment:
Q  322 gacactgctcggatttgacgtgtctcggtaaattggacacgtatcgtgtccgacaccaacacgacaccgacacatataattatat 406  Q
    |||||| |||||||| |||||||| ||||   | |||||| | |||||||||||||| ||||||||||||||| | |||||||||    
T  22652094 gacactcctcggattagacgtgtcccggtg--tcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatat 22652012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 25172675 - 25172718
Alignment:
Q  360 acgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  25172675 acgtatcgtgtccgacattgacacgacaccgacacatataatta 25172718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 11927076 - 11927106
Alignment:
Q  373 gacaccaacacgacaccgacacatataatta 403  Q
    |||||||||||||||||||||||||||||||    
T  11927076 gacaccaacacgacaccgacacatataatta 11927106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 26902149 - 26902195
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||||||||  | ||||||||||||||||||||||    
T  26902149 gacacgtgtcgtgtccgacactcatacgacaccgacacatataatta 26902195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 12606841 - 12606882
Alignment:
Q  403 atataattacgttgaattgtatgattttatcaaattattagc 444  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  12606841 atataattacattgaattatatgattttctcaaattattagc 12606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 388
Target Start/End: Original strand, 41831923 - 41831951
Alignment:
Q  360 acgtatcgtgtccgacaccaacacgacac 388  Q
    |||||||||||||||||||||||||||||    
T  41831923 acgtatcgtgtccgacaccaacacgacac 41831951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 6630896 - 6630932
Alignment:
Q  367 gtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6630896 gtgtccgacaccaacacgacatcgacacatataatta 6630932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 26329355 - 26329402
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    |||||||| ||||||| |||||| ||||||| ||||||||||||||||    
T  26329355 ggacacgtgtcgtgtctgacaccgacacgacgccgacacatataatta 26329402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 19206119 - 19206087
Alignment:
Q  373 gacaccaacacgacaccgacacatataattata 405  Q
    |||||||||| ||||||||||||||||||||||    
T  19206119 gacaccaacaagacaccgacacatataattata 19206087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Original strand, 8039820 - 8039855
Alignment:
Q  368 tgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataatta 8039855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 11666029 - 11665983
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||||  ||| ||||||||||||||||||||||||||    
T  11666029 gacacgtgtcgtgtctaacatcaacacgacaccgacacatataatta 11665983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 28678378 - 28678340
Alignment:
Q  367 gtgtccgacaccaacacgacaccgacacatataattata 405  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  28678378 gtgtctgacaccaacacgacaccgacacatacaattata 28678340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 28812601 - 28812563
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgacac 394  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  28812601 ggacatgtatcgtgtctgacaccaacacgacaccgacac 28812563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 25064992 - 25064952
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacata 397  Q
    ||||||| ||||||||||||||||||||| ||| |||||||    
T  25064992 gacacgtgtcgtgtccgacaccaacacgataccaacacata 25064952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 5970 - 6016
Alignment:
Q  357 gacacgtatcgtgtccgacaccaacacgacaccgacacatataatta 403  Q
    ||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  5970 gacacgtgtcgtgttcgacaccgatacgacaccgacacatataatta 6016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 8608 - 8645
Alignment:
Q  356 ggacacgtatcgtgtccgacaccaacacgacaccgaca 393  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  8608 ggacacgtatcgtgtccgataccgacacgacaccgaca 8645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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