View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535_low_2 (Length: 416)
Name: NF4535_low_2
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 31168669 - 31169068
Alignment:
| Q |
7 |
gcaagagcacggtgcttaaagatattctcaaagagtaagaaattatgatgtatatttgcatgaacacaaatgaatcattgaaaaatagtcagaacttaac |
106 |
Q |
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| T |
31168669 |
gcaagagcacggtgcttaaagatattctcaaagagtaagaaattattatgtatatttgcatgaacacaaatgaatcattgaaaaatagtaagaacttaat |
31168768 |
T |
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| Q |
107 |
gttgtttcctttatgaatggaattcaaacaggcctttttgggtaggagcagctagcaatgctgttgttattgaggcagatgcattcaaagaatcagatgt |
206 |
Q |
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| T |
31168769 |
gttgtttcctttatgaatggaatttaaacaggcctttttgggtaggagcagctagcaatgctgttgttattgaggcagatgcattcaaagaatcagatgt |
31168868 |
T |
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| Q |
207 |
tatctatagggcccttagttcaagagggcatcatgacatgatccgaatggctgaattggtgagatgattaagactcttctctcaaattactaatattcta |
306 |
Q |
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| T |
31168869 |
tatctatagggcccttagttcaagagggcatcatgacatgatccgaatggctgaattggtgagatgattaagactcttctctcaaattactaatattcta |
31168968 |
T |
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| Q |
307 |
agatgatccttgcaaagtgtaaatcaaatttgttattatttttggatttattgtcaaatgcacccctaacattgttcacttggtttcaaattcttctctg |
406 |
Q |
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| T |
31168969 |
agatgatccttgcaaagtgttaatcaaatttgttattatttttggatttattgtcaaatgcactcctaacattgttcactcggtttcaaattcttctctg |
31169068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 38627876 - 38627728
Alignment:
| Q |
97 |
agaacttaacgttgtttcctttatgaatggaattcaaacaggcctttttgggtaggagcagctagcaatgctgttgttattgaggcagatgcattcaaag |
196 |
Q |
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||||| ||| |||||||| |||||||||| |||| |||||| ||||| |||| ||||||| | | ||||| || || ||||| |||||||| ||||||| |
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| T |
38627876 |
agaacctaatgttgtttc-tttatgaatgaaatttaaacagacctttctgggcaggagcatcaggaaatgcagtagtcattgaagcagatgccttcaaag |
38627778 |
T |
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| Q |
197 |
aatcagatgttatctatagggcccttagttcaagagggcatcatgacatg |
246 |
Q |
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| T |
38627777 |
aatcagatgtcatctatagggcacttagctcaacaggccatcatgacatg |
38627728 |
T |
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