View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4535_low_7 (Length: 242)
Name: NF4535_low_7
Description: NF4535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4535_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14582939 - 14582717
Alignment:
| Q |
1 |
gaacatgaattaatgataacagttacctaccttactcatctgcagaaactgaaacaagaacagactctagtcagctgcaaattgagtgaattgaagtaca |
100 |
Q |
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| T |
14582939 |
gaacatgaattaatgataacagttacctaccttactcatctgcagaaactgaaacaagaacagactctagtcagctgcaaattgagtgaattgaagtaca |
14582840 |
T |
|
| Q |
101 |
tcataaagttggcaacttctcaaaggaagacaacaccatctttatgtttattattacattctactgcaagaaaataactataacaatctacgaagcacaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14582839 |
tcataaagttggcaatttctcaaaggaagacaacaccatctttatgtttattattacattctactgcaagaaaataactataacaatctacgaagcacaa |
14582740 |
T |
|
| Q |
201 |
acacaggcacgggacgcgccttc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14582739 |
acacaggcacgggacgcgccttc |
14582717 |
T |
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